View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2649_high_2 (Length: 520)
Name: NF2649_high_2
Description: NF2649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2649_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 9 - 502
Target Start/End: Complemental strand, 53696936 - 53696443
Alignment:
| Q |
9 |
agcagagaaagaaagcgaataattcttccctataaataatgagtgttcgcccagagtttgaatttcttcccacttcagcatattccaattcatcttataa |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53696936 |
agcagagaaagaaagcgaataattcttccctataaataatgagtgttcgcccagagtttgaatttcttcccacttcagcatattccaattcatcttataa |
53696837 |
T |
|
| Q |
109 |
atccagaatttcaccgtcgacatatcaggatatggttcaaaatcccgaggctcatattcctctgtacaatatcgttggatcaataacatttcttccccgg |
208 |
Q |
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|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
53696836 |
atccagaatttcactgtcgacatatcagggtatggttcaaaatcccgaggctcatattcctctgtacaacatcgttggatcaataacatttcttccccgg |
53696737 |
T |
|
| Q |
209 |
agaacacagcgtagaaaacatcattgtaatataaagaggttggtggcggaatataggagactcgaggaccttcaacaacatcacacaccgccgttattcc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53696736 |
agaacacagcgtagaaaacatcattgtaatataaagaggttggtggcggaatataggagactcgaggaccttcaacaacatcacacaccgccgttattcc |
53696637 |
T |
|
| Q |
309 |
actcgtgctcatagcaaaaaacgaaccgttcttgtatacggcgtcagtccagtggtcatccacattcgcatcgaggagaacccaagaatcgtagcccttt |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
53696636 |
actcgtgctcatagcaaaaaacgaaccgttcttgtatacggcgtcagtccagtggtcacccacattcgcatcgaggagaacccaagaatcgcagcccttt |
53696537 |
T |
|
| Q |
409 |
ctgcagaatgctagatgcctaagactgagaatagcgaatgccgcgaaatcatcgttgagggaggggctagatgacaagacaactttgataaggt |
502 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
53696536 |
ctgcagaatgctagatgcctaagaccgagaatagcgaatgccgcgaaatcatcgttgggggaggggttagatgacaagacaactttgataaggt |
53696443 |
T |
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