View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2649_high_3 (Length: 493)
Name: NF2649_high_3
Description: NF2649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2649_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 1 - 487
Target Start/End: Complemental strand, 49623342 - 49622856
Alignment:
| Q |
1 |
gtttcaatcctttaatctcatatttttccaacatatttatcacacaaaaatggataaatagcttaaagttccattccgggcccctgcagataaggattcg |
100 |
Q |
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| T |
49623342 |
gtttcaaccctttaatctcatatttttccaacatatttatcacacaaaaatggataaatagcttaaagttccattccgggcccctgcagataaggattcg |
49623243 |
T |
|
| Q |
101 |
atatcaagaatccaagtcatttaatcaatactacctcaaactaatttcttattaatcaacggagggggttaatcatatatgttacttaatcaaaatcaaa |
200 |
Q |
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| T |
49623242 |
atatcaagaatccaagtcatttaatcaatactacctcaaactaatttcttattaatcaacggagggggttaatcatatatgttacttaatcaaaatcaaa |
49623143 |
T |
|
| Q |
201 |
ttaagcttcctggttccaatcaagcagataaaaaattagtattaattaacataggattccataactttacaagcttatgatatattccctgggtttcccc |
300 |
Q |
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| T |
49623142 |
ttaagcttcctggttccaatcaagcagataaaaaattagtattaattaacataggattccataactttacaagcttatgatatattccctgggtttcccc |
49623043 |
T |
|
| Q |
301 |
attgacatgttggattacgtttaatagcaacatttattggtcaaaagtaaccacaacttcattagtgtctgctactacactccattatatagcttttaac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49623042 |
attgacatgttggattacgtttaatagcaacatttattggtcaaaagtaaccacaacttcattagtgtctgctactacactccattatatagcttttaac |
49622943 |
T |
|
| Q |
401 |
aagattctctaaattcactttagtctaagctttatgttacttcatatgctttgttcaatcatgtgctttagtaccctcctatgctac |
487 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
49622942 |
aagattctctaaattcactttagtctaagctttatgttacttcatatgctttgttcaatcatgtgctttagtaccctcctgtgctac |
49622856 |
T |
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