View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2649_high_4 (Length: 473)
Name: NF2649_high_4
Description: NF2649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2649_high_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 14 - 292
Target Start/End: Complemental strand, 33166763 - 33166486
Alignment:
| Q |
14 |
ttctaaggatgcagttgtacgggggtaaatcaaagagcaaatgttttttggcaaaagaattgcagatggttataatgaacattgtggtcatttctttgca |
113 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
33166763 |
ttctaaggatgcagttgtacaggggtaaatcaaagagcaaatgttttttggcaaaagaattgcagatggttataatgaacattgtggttatttccttgca |
33166664 |
T |
|
| Q |
114 |
aagggcccagtacaactaaaatctcgatggtcgaaggtgaattccataattaaaaaatttggagggtgctacaagcaagcctatccaagaagnnnnnnng |
213 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
33166663 |
aagggaccagtacaactaaaatctcgatggtcgaaggtgaattccataattaaaaaatttggagggtgctacaagcaagcctatccaagaagaaaaaaag |
33166564 |
T |
|
| Q |
214 |
tggtagcttatagtgatgtcatgggagatgcatattcaatctatactcaatatacacatgaatgtttcatgttagagtt |
292 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33166563 |
tggtagcttagagtgatgtcatgggagatgcatatt-aatctatactcaatatacacatgaatgtttcatgttagagtt |
33166486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 287 - 457
Target Start/End: Complemental strand, 33161524 - 33161360
Alignment:
| Q |
287 |
agagtttgcgtggagattgttaaaagatgaacctaaatagtcaaaccaatcacttgaaggagctagtaaaagaacaaagacttcggcttctggagcatac |
386 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33161524 |
agagtttgtgtggagattgttaaaagatgaacctaaatagtcaaaccaatcacttgaaggagctagtaaaagaacaaagacttcggcttctggagcata- |
33161426 |
T |
|
| Q |
387 |
tcatcctcatcctcttctaattcgtgcatgccagaaagttacgattacaacccaactgaaaataatctggt |
457 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
33161425 |
-----cccatcctcttctaattcgtgcatgccagaaagttacgattacaacccaactgaaaataatgtggt |
33161360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 388
Target Start/End: Original strand, 34313183 - 34313286
Alignment:
| Q |
285 |
ttagagtttgcgtggagattgttaaaagatgaacctaaatagtcaaaccaatcacttgaaggagctagtaaaagaacaaagacttcggcttctggagcat |
384 |
Q |
| |
|
||||||| ||| ||| ||||||| |||||||||||||||| |||||| |||| |||||| || |||| ||||| |||| ||| ||||| ||||||| |
|
|
| T |
34313183 |
ttagagtatgcatggcgattgttgaaagatgaacctaaatggtcaaatacatcatttgaagtaggcggtaagagaaccaagatttctgcttcaggagcat |
34313282 |
T |
|
| Q |
385 |
actc |
388 |
Q |
| |
|
|||| |
|
|
| T |
34313283 |
actc |
34313286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University