View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2649_high_8 (Length: 407)
Name: NF2649_high_8
Description: NF2649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2649_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 5794472 - 5794104
Alignment:
| Q |
1 |
ttgacataaaaaatctgcattaaactttagttgcaatgtccattcaaaatgtgattgttgatacgttgattaccacgattgtgactaccatatatgttat |
100 |
Q |
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| T |
5794472 |
ttgacataaaaaatctgcattaaactttagttgcaatgtccattcaaaatgtgattgttgatacgttgattaccacgattgtgactaccatatatgttat |
5794373 |
T |
|
| Q |
101 |
atttatattcatcatatatacacattgctttgtatgtataaatttgaatttcatatgaagnnnnnnnnnncttgtataatcccttaaaaaa-cttgtata |
199 |
Q |
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| T |
5794372 |
atttatattcatcatatatacacattgctttgtatgtataaatttgaatttcatatgaagaaaaaaaaa-cttgtataatcccttaaaaaaacttgtata |
5794274 |
T |
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| Q |
200 |
atcgtggttacattataacactccttagtaggtaaaattaagtgtaagaatagttttgttcttgacggaataaattgttatggatggtgacttgcgctat |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5794273 |
atcgtggttacattataacactccttagtaggtaaaattaagtgtaagaatagttttgttcttgacggaataaattgttatggatggtgacttgcgctat |
5794174 |
T |
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| Q |
300 |
gatcatatgatcaaacacacaatgcttaaatatgtaaatgatatcaccatatattgatcaatttaaataa |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5794173 |
gatcatatgatcaaacacacaatgcttaaatatgtaaatgatatcaccatatattgatcaatttaaataa |
5794104 |
T |
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