View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2649_low_1 (Length: 556)
Name: NF2649_low_1
Description: NF2649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2649_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 1e-91; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 29 - 261
Target Start/End: Complemental strand, 41798693 - 41798462
Alignment:
| Q |
29 |
aaagcaaactgggaaagaatatagcgaaatatttgttcttgaaaggtnnnnnnnttgtgaatttgatggttctgccttgtgagcactctagggatgatac |
128 |
Q |
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| T |
41798693 |
aaagcaaactgggaaagaatatagcgaaatatttgttcttgaaaggtaaaaaa-ttgtgaatttgatggttctgccttgcgagcactctagggatgatac |
41798595 |
T |
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| Q |
129 |
aagaatgaggaaatagagaatnnnnnnnngacgatgaagtagaataagaagattgaaacgtgtggaattggtactaactttgaacatttaaaaaatttaa |
228 |
Q |
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| T |
41798594 |
aagaatgaggaaataaagaataaaaaaaagacgatgaagtagaataagaagattgaaacgtgtggaattggtactaactttgaacatttaaaaaatttaa |
41798495 |
T |
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| Q |
229 |
atttgatttgattcaacatatgctaccagcggt |
261 |
Q |
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| T |
41798494 |
atttgatttgattcaacatatgctaccaacggt |
41798462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 431 - 549
Target Start/End: Complemental strand, 41798284 - 41798163
Alignment:
| Q |
431 |
tatcatagatacgatgatatactcgtggacagttcaaaatctttggattatgttacctgcttagtaaatacacacatatatgaacttatc---caagaca |
527 |
Q |
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| T |
41798284 |
tatcatagatacgatgatatactcgtggacagttcaaaatctttggattatcttacctgcttagtaaatacacacatatatgaacttatccaacaagaca |
41798185 |
T |
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| Q |
528 |
aacacatatatcatattcttcg |
549 |
Q |
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| T |
41798184 |
aacatatatatcatattattcg |
41798163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 293 - 349
Target Start/End: Complemental strand, 41798430 - 41798374
Alignment:
| Q |
293 |
gaaggaaacacaaacatgaacaaatggaataatcttgaatgtgatgaacttttgttg |
349 |
Q |
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| T |
41798430 |
gaaggaaacacaaacatgaagaaatggaataatcttgaatgtgatgaacttttgttg |
41798374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 26 - 201
Target Start/End: Complemental strand, 3380124 - 3379949
Alignment:
| Q |
26 |
atgaaagcaaactgggaaagaatatagcgaaatatttgttcttgaaaggtnnnnnnnttgtgaatttgatggttctgccttgtgagcactctagggatga |
125 |
Q |
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| T |
3380124 |
atgaaagcaaactgggaaagagtatggcaaaatatttgttcttggaaggtaaaat--ttgtgagttcgatggttgtggcttgtgagcactctagggataa |
3380027 |
T |
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| Q |
126 |
tacaagaatgaggaa-atagag-aatnnnnnnnngacgatgaagtagaataagaagattgaaacgtgtggaattggta |
201 |
Q |
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| T |
3380026 |
tagaagaatgaggaatatagaataataaaaaaaagatgatgaagtagaataagaagattgaaacgtgtggaattggta |
3379949 |
T |
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