View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2649_low_10 (Length: 377)

Name: NF2649_low_10
Description: NF2649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2649_low_10
NF2649_low_10
[»] chr5 (5 HSPs)
chr5 (34-360)||(33584501-33584825)
chr5 (306-362)||(10161328-10161384)
chr5 (306-354)||(23245202-23245250)
chr5 (306-360)||(26916847-26916901)
chr5 (306-362)||(5243486-5243542)
[»] chr1 (3 HSPs)
chr1 (306-362)||(23926097-23926153)
chr1 (306-360)||(5609919-5609973)
chr1 (306-361)||(34900136-34900191)
[»] chr2 (1 HSPs)
chr2 (306-360)||(32006505-32006559)
[»] chr4 (6 HSPs)
chr4 (306-361)||(3683602-3683657)
chr4 (306-352)||(12701836-12701882)
chr4 (306-347)||(33632866-33632907)
chr4 (306-360)||(19655514-19655568)
chr4 (306-362)||(2321833-2321889)
chr4 (306-354)||(9132113-9132161)
[»] chr3 (6 HSPs)
chr3 (306-362)||(16973037-16973093)
chr3 (306-354)||(42605714-42605762)
chr3 (306-362)||(22101350-22101406)
chr3 (306-362)||(22176294-22176350)
chr3 (306-360)||(38076746-38076800)
chr3 (306-339)||(51970218-51970251)
[»] chr8 (2 HSPs)
chr8 (306-362)||(35063722-35063778)
chr8 (306-347)||(5493264-5493305)
[»] chr7 (1 HSPs)
chr7 (306-360)||(32651915-32651969)
[»] scaffold0031 (1 HSPs)
scaffold0031 (306-354)||(78657-78705)


Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 34 - 360
Target Start/End: Complemental strand, 33584825 - 33584501
Alignment:
Q  34 tgagtattgaatagtagtaataaggtgtgtgatggggaattaatgaacgatgatgctgggatatctctttgctcattaaatggacttggtaacaaaggaa 133  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  33584825 tgagtattgaataatagtaataaggtgtgtgatggggaattaatgaacgatgatgctgggatatctctttgctcattaaagggacttggtaacaaaggaa 33584726  T
Q  134 atggaatcagtgaggtggaggtcaacgagaaattagagaatgtagtctaacctataagatggtcaatgagttccatcatggtatgaaatcccttcttttc 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33584725 atggaatcagtgaggtggaggtcaacgagaaattagagaatgtagtctaacctataagatggtcaatgagttccatcatggtatgaaatcccttcttttc 33584626  T
Q  234 tatgtataaacannnnnnnnncttgttaatcggtgctccgtcccgggcactagttaaggaaac--nnnnnnnnntatttgcattgaaaatattattcttt 331  Q
    |||||||||||           || ||  ||||||||||| ||||  ||||||||||||||||           ||||||||||||||||||||||||||    
T  33584625 tatgtataaac----ttttttttttttcttcggtgctccgccccgaacactagttaaggaaacaagaaaagaaatatttgcattgaaaatattattcttt 33584530  T
Q  332 acactttttaaactttaactacaaaagtt 360  Q
    |||||||||||||||||||||||||||||    
T  33584529 acactttttaaactttaactacaaaagtt 33584501  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 362
Target Start/End: Original strand, 10161328 - 10161384
Alignment:
Q  306 tatttgcattgaaaatattattctttacactttttaaactttaactacaaaagttcc 362  Q
    ||||||||||||||| || ||| ||||||||||||||||||| | |||| |||||||    
T  10161328 tatttgcattgaaaacatcattttttacactttttaaactttgattacacaagttcc 10161384  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 354
Target Start/End: Original strand, 23245202 - 23245250
Alignment:
Q  306 tatttgcattgaaaatattattctttacactttttaaactttaactaca 354  Q
    ||||||||||||||| || |||||||||||||||||| |||| ||||||    
T  23245202 tatttgcattgaaaacatcattctttacactttttaatctttgactaca 23245250  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 360
Target Start/End: Original strand, 26916847 - 26916901
Alignment:
Q  306 tatttgcattgaaaatattattctttacactttttaaactttaactacaaaagtt 360  Q
    ||||||||||||||| || ||| ||||||||||||||| ||| |||||| |||||    
T  26916847 tatttgcattgaaaaaatcattttttacactttttaaatttttactacacaagtt 26916901  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 362
Target Start/End: Complemental strand, 5243542 - 5243486
Alignment:
Q  306 tatttgcattgaaaatattattctttacactttttaaactttaactacaaaagttcc 362  Q
    |||||||||||||||  ||||  ||||| ||||||||||||| |||||| |||||||    
T  5243542 tatttgcattgaaaacgttatcttttaccctttttaaactttgactacataagttcc 5243486  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 306 - 362
Target Start/End: Complemental strand, 23926153 - 23926097
Alignment:
Q  306 tatttgcattgaaaatattattctttacactttttaaactttaactacaaaagttcc 362  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||    
T  23926153 tatttgcattgaaaatatcattctttacactttttaaactttgactacacaagttcc 23926097  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 360
Target Start/End: Original strand, 5609919 - 5609973
Alignment:
Q  306 tatttgcattgaaaatattattctttacactttttaaactttaactacaaaagtt 360  Q
    |||||| ||||| ||| | |||||||||||||||||||||||||||||| |||||    
T  5609919 tatttgtattgagaatgtcattctttacactttttaaactttaactacacaagtt 5609973  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 361
Target Start/End: Original strand, 34900136 - 34900191
Alignment:
Q  306 tatttgcattgaaaatattattctttacactttttaaactttaactacaaaagttc 361  Q
    |||||||||||| || || |||||||| |||||||||||||| |||||| ||||||    
T  34900136 tatttgcattgagaacatcattctttatactttttaaactttgactacacaagttc 34900191  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 306 - 360
Target Start/End: Original strand, 32006505 - 32006559
Alignment:
Q  306 tatttgcattgaaaatattattctttacactttttaaactttaactacaaaagtt 360  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||| |||||    
T  32006505 tatttgcattgaaaatatcattctttacactttttaaactttgactacacaagtt 32006559  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 306 - 361
Target Start/End: Original strand, 3683602 - 3683657
Alignment:
Q  306 tatttgcattgaaaatattattctttacactttttaaactttaactacaaaagttc 361  Q
    |||||| |||||||| |||||| |||||||||||||||||||||||||||| ||||    
T  3683602 tatttgtattgaaaacattattatttacactttttaaactttaactacaaatgttc 3683657  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 352
Target Start/End: Original strand, 12701836 - 12701882
Alignment:
Q  306 tatttgcattgaaaatattattctttacactttttaaactttaacta 352  Q
    ||||||||||||||| || ||||||||||||||||||||||| ||||    
T  12701836 tatttgcattgaaaacatcattctttacactttttaaactttgacta 12701882  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 33632907 - 33632866
Alignment:
Q  306 tatttgcattgaaaatattattctttacactttttaaacttt 347  Q
    |||||| ||||||||||| |||||||||||||||||||||||    
T  33632907 tatttgtattgaaaatatcattctttacactttttaaacttt 33632866  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 360
Target Start/End: Original strand, 19655514 - 19655568
Alignment:
Q  306 tatttgcattgaaaatattattctttacactttttaaactttaactacaaaagtt 360  Q
    |||||| ||| |||| || ||||||||||||||||||||||| |||||| |||||    
T  19655514 tatttgtattaaaaacataattctttacactttttaaactttgactacacaagtt 19655568  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 362
Target Start/End: Complemental strand, 2321889 - 2321833
Alignment:
Q  306 tatttgcattgaaaatattattctttacactttttaaactttaactacaaaagttcc 362  Q
    ||||||||||||||| || ||  ||||||||||||||||||| || ||| |||||||    
T  2321889 tatttgcattgaaaacatcatcttttacactttttaaactttcaccacacaagttcc 2321833  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 354
Target Start/End: Complemental strand, 9132161 - 9132113
Alignment:
Q  306 tatttgcattgaaaatattattctttacactttttaaactttaactaca 354  Q
    |||||| |||||||| || ||| ||||||||||||||||||| ||||||    
T  9132161 tatttggattgaaaacatcattttttacactttttaaactttgactaca 9132113  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 306 - 362
Target Start/End: Original strand, 16973037 - 16973093
Alignment:
Q  306 tatttgcattgaaaatattattctttacactttttaaactttaactacaaaagttcc 362  Q
    |||||| |||||||| || ||||||||||||||||||||||| |||||| |||||||    
T  16973037 tatttgtattgaaaacataattctttacactttttaaactttgactacacaagttcc 16973093  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 306 - 354
Target Start/End: Original strand, 42605714 - 42605762
Alignment:
Q  306 tatttgcattgaaaatattattctttacactttttaaactttaactaca 354  Q
    |||||||||  ||||||||||| ||||||||||||||||||||||||||    
T  42605714 tatttgcataaaaaatattattttttacactttttaaactttaactaca 42605762  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 362
Target Start/End: Complemental strand, 22101406 - 22101350
Alignment:
Q  306 tatttgcattgaaaatattattctttacactttttaaactttaactacaaaagttcc 362  Q
    ||||||||||||||  || |||||||| |||||||||||||| |||||| |||||||    
T  22101406 tatttgcattgaaagcatcattctttatactttttaaactttgactacacaagttcc 22101350  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 362
Target Start/End: Complemental strand, 22176350 - 22176294
Alignment:
Q  306 tatttgcattgaaaatattattctttacactttttaaactttaactacaaaagttcc 362  Q
    ||||||||||||||| || ||| |||| |||||||||||||| |||||| |||||||    
T  22176350 tatttgcattgaaaacatcattatttatactttttaaactttgactacacaagttcc 22176294  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 360
Target Start/End: Complemental strand, 38076800 - 38076746
Alignment:
Q  306 tatttgcattgaaaatattattctttacactttttaaactttaactacaaaagtt 360  Q
    |||||| |||||||| || ||| ||||||||||||||| |||||||||| |||||    
T  38076800 tatttgtattgaaaacatcattttttacactttttaaattttaactacacaagtt 38076746  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 339
Target Start/End: Original strand, 51970218 - 51970251
Alignment:
Q  306 tatttgcattgaaaatattattctttacactttt 339  Q
    |||||||||| |||||||||||||||||||||||    
T  51970218 tatttgcattaaaaatattattctttacactttt 51970251  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 362
Target Start/End: Complemental strand, 35063778 - 35063722
Alignment:
Q  306 tatttgcattgaaaatattattctttacactttttaaactttaactacaaaagttcc 362  Q
    ||||||||||||||| ||  |||||||||||||| ||||||| |||||| |||||||    
T  35063778 tatttgcattgaaaacatctttctttacacttttgaaactttgactacacaagttcc 35063722  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 5493305 - 5493264
Alignment:
Q  306 tatttgcattgaaaatattattctttacactttttaaacttt 347  Q
    ||||||||||||||| || |||||||||||||||| ||||||    
T  5493305 tatttgcattgaaaacataattctttacacttttttaacttt 5493264  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 360
Target Start/End: Original strand, 32651915 - 32651969
Alignment:
Q  306 tatttgcattgaaaatattattctttacactttttaaactttaactacaaaagtt 360  Q
    ||||||||||||||| || ||| |||| |||||||||||||| |||||| |||||    
T  32651915 tatttgcattgaaaacatcattatttatactttttaaactttgactacacaagtt 32651969  T

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Target: scaffold0031 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 354
Target Start/End: Complemental strand, 78705 - 78657
Alignment:
Q  306 tatttgcattgaaaatattattctttacactttttaaactttaactaca 354  Q
    |||||||||| |||| || ||||| ||||||||||||||||| ||||||    
T  78705 tatttgcattaaaaacatcattctatacactttttaaactttgactaca 78657  T

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