View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2649_low_11 (Length: 330)
Name: NF2649_low_11
Description: NF2649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2649_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 12 - 314
Target Start/End: Original strand, 53463354 - 53463654
Alignment:
| Q |
12 |
atgaattgcagtcacgtaacataaaattgaagacacgtatgttagggttgttgaagaaagtgggatgaatggggccatatgtattgtactactgctttga |
111 |
Q |
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| T |
53463354 |
atgaattgcagtcacgtaacataaaattgaagacacgtatgttagggttgttgaagaaagtgggatgaatggggccatatgtattgtactactactttga |
53463453 |
T |
|
| Q |
112 |
acggtttcatgtactttctgacaaagagtcacaagtaacgcagtgggannnnnnngattttgatcttactaatnnnnnnncaaacgacaccagccagctc |
211 |
Q |
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| T |
53463454 |
acggtttcatgtactttctgacaaagagtcacaagtaacgcagtgggattttttttattttgatcttactaataaaaaaacaaacgacaccagccagctc |
53463553 |
T |
|
| Q |
212 |
ggcctgtgtgatcgattttaactcaatcatcactcaatttggttatttgccgtcaaattaaatagnnnnnnnnnngttacaacatgttttaaataggttt |
311 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
53463554 |
ggcttgtgtgatcgattttaactcaatcatcactcaatttggttatttgccgtcaaattaaatag--ttttttttgttacaacatgttttaaataggttt |
53463651 |
T |
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| Q |
312 |
agt |
314 |
Q |
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||| |
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| T |
53463652 |
agt |
53463654 |
T |
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