View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2649_low_12 (Length: 323)
Name: NF2649_low_12
Description: NF2649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2649_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 17 - 305
Target Start/End: Complemental strand, 53425777 - 53425489
Alignment:
| Q |
17 |
tgcatggcctcaaaagatttcaattcatccaactgtaacaggtgtgttgtgaataagatgtttttcatcgatctgaattgattatgattttgtaacaaaa |
116 |
Q |
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|||||| | |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53425777 |
tgcatgacatcaaaagacttcaactcatccaactgtaacaggtgtgttgtgaataagatgtttttcatcgatctgaattgattatgattttgtaacaaaa |
53425678 |
T |
|
| Q |
117 |
tattacataaatttaaccaaaccctgctaatcaatatgtgattgatttgaatttctctctcacataaatcgagtcaagccaacctgttatatcctataca |
216 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
53425677 |
tattaaataaatttaaccaaaccctgctaatcaatatgtgattgatttgaatttctctctcacataaatcgagtcaagccaacctgttatatcccataca |
53425578 |
T |
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| Q |
217 |
ttatttctatgtttacgcttatgaggtccattagaataaaagctgccatgaatttgtttttctatttttaggaagataataggagcaag |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53425577 |
ttatttctatgtttacgcttatgaggtccattagaataaaagctgccatgaatttgtttttctatttttaggaagataataggagcaag |
53425489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 53434071 - 53434025
Alignment:
| Q |
13 |
cacatgcatggcctcaaaagatttcaattcatccaactgtaacaggt |
59 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
53434071 |
cacatgcatggcctcaaaagatttcaactcatccaactgtaacaggt |
53434025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 26098777 - 26098735
Alignment:
| Q |
17 |
tgcatggcctcaaaagatttcaattcatccaactgtaacaggt |
59 |
Q |
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|||||| | |||||||||||||| ||||||||||||||||||| |
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| T |
26098777 |
tgcatgacatcaaaagatttcaactcatccaactgtaacaggt |
26098735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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