View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2649_low_14 (Length: 319)

Name: NF2649_low_14
Description: NF2649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2649_low_14
NF2649_low_14
[»] chr8 (2 HSPs)
chr8 (1-190)||(4029819-4030005)
chr8 (189-319)||(4030060-4030190)
[»] chr2 (3 HSPs)
chr2 (193-319)||(29351081-29351207)
chr2 (87-160)||(29351261-29351339)
chr2 (47-107)||(29351338-29351399)
[»] chr4 (7 HSPs)
chr4 (223-319)||(48864688-48864784)
chr4 (206-289)||(48734725-48734801)
chr4 (220-280)||(49106117-49106177)
chr4 (221-280)||(7909003-7909062)
chr4 (221-278)||(37826291-37826348)
chr4 (221-280)||(7773088-7773145)
chr4 (4-58)||(48856803-48856858)
[»] chr3 (1 HSPs)
chr3 (221-280)||(11014798-11014857)
[»] chr5 (2 HSPs)
chr5 (221-319)||(29696898-29697002)
chr5 (221-285)||(29688825-29688889)
[»] chr7 (1 HSPs)
chr7 (221-280)||(48884548-48884607)


Alignment Details
Target: chr8 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 4029819 - 4030005
Alignment:
Q  1 atgaaaatgtaagagggtcattggaatatcaaattgacaagaattcaatgttcattctgtgatacaa-ccatataccagtgaagcttatagaaagaacaa 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  4029819 atgaaaatgtaagagggtcattggaatatcaaattgacaagaattcaatgttcattctgtgatacaaaccatataccagtgaaggttatagaaagaacaa 4029918  T
Q  100 aagcacatgatatgacaaattattacaaatgagctccttaccctcccaactctcgcacaaataaagcttttaacattttcaataaacatat 190  Q
    || |||||| |||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||    
T  4029919 aatcacatggtatgacaaattattacaaatgagctccttaccctcccaact----cacaaataaagcttttaacattttcaataaacatat 4030005  T

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Target: chr8; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 189 - 319
Target Start/End: Original strand, 4030060 - 4030190
Alignment:
Q  189 atactgattggtactacaaatgcattcaaagttcaaacacatagtaccctacaaatgcaaccgcccaagagttcataatacaatataattatcaagaaaa 288  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4030060 atactgattggcattacaaatgcattcaaagttcaaacacatagtaccctacaaatgcaaccgcccaagagttcataatacaatataattatcaagaaaa 4030159  T
Q  289 tagtgaaagataatacttcaaaacctcattc 319  Q
    ||||||||||||||||||||||| |||||||    
T  4030160 tagtgaaagataatacttcaaaaactcattc 4030190  T

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Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 193 - 319
Target Start/End: Complemental strand, 29351207 - 29351081
Alignment:
Q  193 tgattggtactacaaatgcattcaaagttcaaacacatagtaccctacaaatgcaaccgcccaagagttcataatacaatataattatcaagaaaatagt 292  Q
    ||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29351207 tgatttgtattacaagtgcattcaaagttcaaacacatagtaccctacaaatgcaaccacccaagagttcataatacaatataattatcaagaaaatagt 29351108  T
Q  293 gaaagataatacttcaaaacctcattc 319  Q
    ||||||||||| |||| ||||||||||    
T  29351107 gaaagataatatttcacaacctcattc 29351081  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 87 - 160
Target Start/End: Complemental strand, 29351339 - 29351261
Alignment:
Q  87 atagaaagaacaaaagcacatgatatgacaa-----attattacaaatgagctccttaccctcccaactctcgcacaaa 160  Q
    ||||||||||||||||||||||| |||||||     |||||||||||||||||||||||||| ||||||||| ||||||    
T  29351339 atagaaagaacaaaagcacatgacatgacaagacaaattattacaaatgagctccttaccctaccaactctcacacaaa 29351261  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 29351399 - 29351338
Alignment:
Q  47 aatgttcattctgtgatacaaccatataccagtgaagcttat-agaaagaacaaaagcacat 107  Q
    |||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||    
T  29351399 aatgttcattctgtgatagaaacatataccagtgaagcttatcagaaagaacaaaagcacat 29351338  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 223 - 319
Target Start/End: Complemental strand, 48864784 - 48864688
Alignment:
Q  223 aaacacatagtaccctacaaatgcaaccgcccaagagttcataatacaatataattatcaagaaaatagtgaaagataatacttcaaaacctcattc 319  Q
    |||||||| ||||||||||||||||  |  |||||||||||||| ||||||||| |||||||||||||||||| || |||| |||| ||||||||||    
T  48864784 aaacacatggtaccctacaaatgcagtcatccaagagttcataacacaatataaatatcaagaaaatagtgaaggagaatatttcacaacctcattc 48864688  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 289
Target Start/End: Original strand, 48734725 - 48734801
Alignment:
Q  206 aaatgcattcaaagttcaaacacatagtaccctacaaatgcaaccgcccaagagttcataatacaatataattatcaagaaaat 289  Q
    ||||||||||||| ||||||||||| |||||||||||||||      ||||||||||||||| |||||||| ||||||||||||    
T  48734725 aaatgcattcaaa-ttcaaacacatggtaccctacaaatgc------ccaagagttcataatgcaatataaatatcaagaaaat 48734801  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 280
Target Start/End: Original strand, 49106117 - 49106177
Alignment:
Q  220 ttcaaacacatagtaccctacaaatgcaaccgcccaagagttcataatacaatataattat 280  Q
    |||||||||||| ||  |||||||||||||| | |||||||||||||||||||||||||||    
T  49106117 ttcaaacacatactaatctacaaatgcaaccactcaagagttcataatacaatataattat 49106177  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 221 - 280
Target Start/End: Complemental strand, 7909062 - 7909003
Alignment:
Q  221 tcaaacacatagtaccctacaaatgcaaccgcccaagagttcataatacaatataattat 280  Q
    ||||||| ||| ||||||| |||||||||| |||||||||||| ||||||||||||||||    
T  7909062 tcaaacatatactaccctaaaaatgcaaccacccaagagttcaaaatacaatataattat 7909003  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 278
Target Start/End: Original strand, 37826291 - 37826348
Alignment:
Q  221 tcaaacacatagtaccctacaaatgcaaccgcccaagagttcataatacaatataatt 278  Q
    ||||||||||| |||||||||||| ||  | |||||||||||||||||||||||||||    
T  37826291 tcaaacacatattaccctacaaatccagacacccaagagttcataatacaatataatt 37826348  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 280
Target Start/End: Original strand, 7773088 - 7773145
Alignment:
Q  221 tcaaacacatagtaccctacaaatgcaaccgcccaagagttcataatacaatataattat 280  Q
    ||||||||||| | ||||||||||||||||  |  |||||||||||||||||||||||||    
T  7773088 tcaaacacatattgccctacaaatgcaaccatc--agagttcataatacaatataattat 7773145  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 48856858 - 48856803
Alignment:
Q  4 aaaatgtaagaggg-tcattggaatatcaaattgacaagaattcaatgttcattct 58  Q
    |||||||||||||| || ||||||||||||||||||| ||| |||||||| |||||    
T  48856858 aaaatgtaagaggggtcgttggaatatcaaattgacaggaagtcaatgtttattct 48856803  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 280
Target Start/End: Original strand, 11014798 - 11014857
Alignment:
Q  221 tcaaacacatagtaccctacaaatgcaaccgcccaagagttcataatacaatataattat 280  Q
    ||||||||||| ||||| ||||||||| || |||||||||| |||||| |||||||||||    
T  11014798 tcaaacacatattacccaacaaatgcagccacccaagagtttataatataatataattat 11014857  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 319
Target Start/End: Complemental strand, 29697002 - 29696898
Alignment:
Q  221 tcaaacacatagtaccctacaaatgcaaccgcccaagagttcataatacaatataatt------atcaagaaaatagtgaaagataatacttcaaaacct 314  Q
    ||||||| ||| ||||||||||||||| |  | ||||||| |||||||||||||||||      |||| |||||| |||||  | |||||||||||||||    
T  29697002 tcaaacatatattaccctacaaatgcagctactcaagagtccataatacaatataattataaagatcatgaaaatggtgaagaagaatacttcaaaacct 29696903  T
Q  315 cattc 319  Q
    |||||    
T  29696902 cattc 29696898  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 285
Target Start/End: Complemental strand, 29688889 - 29688825
Alignment:
Q  221 tcaaacacatagtaccctacaaatgcaaccgcccaagagttcataatacaatataattatcaaga 285  Q
    ||||||||||| |||||||| |||||| || | ||||||| |||||||| |||||||||| ||||    
T  29688889 tcaaacacatattaccctacgaatgcagccactcaagagtacataatactatataattataaaga 29688825  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 280
Target Start/End: Complemental strand, 48884607 - 48884548
Alignment:
Q  221 tcaaacacatagtaccctacaaatgcaaccgcccaagagttcataatacaatataattat 280  Q
    ||||||||||| ||| ||||||||||| || || ||||||||||||| ||||||| ||||    
T  48884607 tcaaacacatattactctacaaatgcagccaccaaagagttcataatgcaatatagttat 48884548  T

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