View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2649_low_17 (Length: 285)
Name: NF2649_low_17
Description: NF2649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2649_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 48 - 275
Target Start/End: Original strand, 5795453 - 5795680
Alignment:
| Q |
48 |
caaaccactgccaaggcatggttatagaagcaaccccttgactttcttatttttcctaagacataaacaacaattttctagcaagacaaaagaggtcccc |
147 |
Q |
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| T |
5795453 |
caaaccactgccaaggcatggttatagaagcaaccccttggctttcttatttttcctaagacataaacaacaattttctagcaagacaaaagaggtcccc |
5795552 |
T |
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| Q |
148 |
aaaccgtatcatggatacgcctaaccaatgaaaaatcttataccaaatttcattcgcaaactcacactttgcaaataggttgtcttccgtttccttcacc |
247 |
Q |
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| T |
5795553 |
aaaccgtatcatggatacgcctaaccaatgaaaaatcttataccaaatttcattcgcaaactcacactttgcaaatgggttgtcttccgtttccttcacc |
5795652 |
T |
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| Q |
248 |
ctcgaaaaccagcaacatttcggttcat |
275 |
Q |
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| T |
5795653 |
ctcgaaaaccagcaacatttcggttcat |
5795680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 275
Target Start/End: Original strand, 13369935 - 13370022
Alignment:
| Q |
188 |
taccaaatttcattcgcaaactcacactttgcaaataggttgtcttccgtttccttcaccctcgaaaaccagcaacatttcggttcat |
275 |
Q |
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| T |
13369935 |
taccaaattgcacttgcaaactcacattttgtgaataggtggtcctccgtttccttcaccccgggacaccaacaacaattcggttcat |
13370022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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