View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2649_low_19 (Length: 250)
Name: NF2649_low_19
Description: NF2649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2649_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 6 - 239
Target Start/End: Original strand, 49987304 - 49987537
Alignment:
| Q |
6 |
aaaatatcccatcatcacttcctccttttctatctatatttattcaaaaatagaaaacacataacccataactgctatacataactgacacataaaaaca |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49987304 |
aaaatatcccatcatcacttcctccttttctatctatatttattcaaaaatagaaaacacataacccataactgctatacataactgacacataaaaaca |
49987403 |
T |
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| Q |
106 |
caactgcccataaccgccatcataagaagtctaacatctcgacgtttgtcttggtgcttttaaaggtgccaatcatactcactgacgggtctatagataa |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49987404 |
caactgcccataaccgccatcataagaagtctaacatctcgatgtttgtcttggtgcttttaaaggtgccaatcatactcactgacgggtctatagataa |
49987503 |
T |
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| Q |
206 |
agtaatcaccaatgctgtgttttctcacattcat |
239 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
49987504 |
agtaatcaccaatgctgtgttttctcacattcat |
49987537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 7 - 141
Target Start/End: Original strand, 16772903 - 16773037
Alignment:
| Q |
7 |
aaatatcccatcatcacttcctccttttctatctatatttattcaaaaatagaaa-acacataacccataactgctatacataactgacacataaaaaca |
105 |
Q |
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||||||||||| ||||||| |||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||| ||||||||||||||||||| || |
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| T |
16772903 |
aaatatcccataatcactttctccttttctatctatatttattctaaac-agaaacacacataacccataactgctaaacataactgacacataaaagca |
16773001 |
T |
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| Q |
106 |
caactgcccataaccgccatcataagaagtctaaca |
141 |
Q |
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| T |
16773002 |
aaactgcccataaccgccatcataagaagtctaaca |
16773037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 38 - 96
Target Start/End: Original strand, 44260892 - 44260951
Alignment:
| Q |
38 |
tctatatttattcaaaaatagaaa-acacataacccataactgctatacataactgacac |
96 |
Q |
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| T |
44260892 |
tctatatttattctaaaacagaaacacacataacccataattgctatacataactgacac |
44260951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 141
Target Start/End: Complemental strand, 24060461 - 24060330
Alignment:
| Q |
11 |
atcccatcatcacttcctccttttctatctatatttattcaaaaatagaaa-acacataacccataactgctatacataactgacacataa---aaacac |
106 |
Q |
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||||||| ||||||| ||||||| || ||||| |||||| |||| ||||| |||||||||||||||||||||||| ||| |||||||||| |||| |
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| T |
24060461 |
atcccataatcactttctcctttcctgtctat--ttattctaaaacagaaacacacataacccataactgctatac-taattgacacataataaaaacct |
24060365 |
T |
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| Q |
107 |
aactgcccataaccgccatcataagaagtctaaca |
141 |
Q |
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|||| |||||||||||| ||||||||||||||||| |
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| T |
24060364 |
aacttcccataaccgccgtcataagaagtctaaca |
24060330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 137
Target Start/End: Complemental strand, 20936552 - 20936451
Alignment:
| Q |
38 |
tctatatttattcaaaaatagaaaacacataacccataactgctatacataactgacac---ataaaaacacaactgcccataaccgccatcataagaag |
134 |
Q |
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||||||||| ||| |||| ||||| |||| ||||||||||| ||||||||||||||||| ||||||||| ||| ||||||| |||||||||||||||| |
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| T |
20936552 |
tctatattttttctaaaacagaaa-cacacaacccataacttctatacataactgacacataataaaaacataacagcccatacccgccatcataagaag |
20936454 |
T |
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| Q |
135 |
tct |
137 |
Q |
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||| |
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|
| T |
20936453 |
tct |
20936451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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