View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2649_low_21 (Length: 243)
Name: NF2649_low_21
Description: NF2649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2649_low_21 |
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| [»] chr6 (2 HSPs) |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 87 - 243
Target Start/End: Original strand, 17932959 - 17933112
Alignment:
| Q |
87 |
accgttgttgctggttttgtgcgtcttacacagaccaaaccttaataatactttgttgttnnnnnnnnnnnngaggaagtgtatcatagccagctctatc |
186 |
Q |
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| T |
17932959 |
accgttgttgctggttttgtgcgtcttacacagaccaaaccttaataatactttgttgttaaaaaaaaaa---aggaagtgtatcatagccagctctatc |
17933055 |
T |
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| Q |
187 |
aaattcatgattatttggatgcttagtcatatgagagtgtgcaatatctacttcatt |
243 |
Q |
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| T |
17933056 |
aaattcatgattatttggatgcttagtcatatgaaagtgtgcaatatctacttcatt |
17933112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 17932884 - 17932933
Alignment:
| Q |
19 |
atcaataggtagtgttagtgtatcatactcagccgttatatatggcgcca |
68 |
Q |
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| T |
17932884 |
atcaataggaagtgttagtgtatcatactcagcctatatatatggcgcca |
17932933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 1e-52; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 87 - 243
Target Start/End: Complemental strand, 32844972 - 32844821
Alignment:
| Q |
87 |
accgttgttgctggttttgtgcgtcttacacagaccaaaccttaataatactttgttgttnnnnnnnnnnnngaggaagtgtatcatagccagctctatc |
186 |
Q |
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| T |
32844972 |
accgttgttgctggttttgtgcatcttacacagaccaaaccttaataatactttgttgttaataaaaa-----aggaagtgtatcatagccagctctatc |
32844878 |
T |
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| Q |
187 |
aaattcatgattatttggatgcttagtcatatgagagtgtgcaatatctacttcatt |
243 |
Q |
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| T |
32844877 |
aaattcatgattatttggatgcttagtcatatgagagtgtgcaatatctacatcatt |
32844821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 32831608 - 32831550
Alignment:
| Q |
185 |
tcaaattcatgattatttggatgcttagtcatatgagagtgtgcaatatctacttcatt |
243 |
Q |
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| T |
32831608 |
tcaaaatcatgattatttggatgctcgaccatatgagagtgtgcaatatctacatcatt |
32831550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 32845041 - 32844986
Alignment:
| Q |
19 |
atcaataggtagtgttag--tgtatcatactcagccgttatatatggcgccagatg |
72 |
Q |
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| T |
32845041 |
atcaataggaagtgttagcgtgtatcatactcagcctatatatatggcgccagatg |
32844986 |
T |
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