View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2649_low_23 (Length: 239)
Name: NF2649_low_23
Description: NF2649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2649_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 14 - 223
Target Start/End: Complemental strand, 44714389 - 44714180
Alignment:
| Q |
14 |
aagcaaagggttagagtcaatattcatgtttgtaagttgcttagtgtagttgataaatctgggattaggagaattccaatgggagaacatagtcttcaca |
113 |
Q |
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| T |
44714389 |
aagcaaagggttagagtaaatattcatgtttgtaagttgcttagtgtagttgataaatctgggattaggagaattccaatgggagaacatagtcttcaca |
44714290 |
T |
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| Q |
114 |
ttggtgatgttaaacattcggtttcactacaagcagaagcacttgggattatcaagtcttgaatttttaggcatgtccattcaaagagaaatttgttgat |
213 |
Q |
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| T |
44714289 |
ttggtgatgttaaacattcggtttcactacaagcagaagcacttgggattatcaagtcttgaatttttaggcatgtccattcaaagagaaatttgttgat |
44714190 |
T |
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| Q |
214 |
atatattggt |
223 |
Q |
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|||||||||| |
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| T |
44714189 |
atatattggt |
44714180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 30 - 181
Target Start/End: Original strand, 39091395 - 39091546
Alignment:
| Q |
30 |
tcaatattcatgtttgtaagttgcttagtgtagttgataaatctgggattaggagaattccaatgggagaacatagtcttcacattggtgatgttaaaca |
129 |
Q |
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| T |
39091395 |
tcaatattcatgtatgtaagcttttgagtgtggttgataagtctgggactaggagaattccaatgggagcacatagtattcacattggtgatgttaaaca |
39091494 |
T |
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| Q |
130 |
ttcggtttcactacaagcagaagcacttgggattatcaagtcttgaattttt |
181 |
Q |
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| T |
39091495 |
ttttgtatcacttcaagaacaaaaactagggatcatcaagacctgaattttt |
39091546 |
T |
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