View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2649_low_24 (Length: 213)
Name: NF2649_low_24
Description: NF2649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2649_low_24 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 1808201 - 1807989
Alignment:
| Q |
1 |
cgaaaacttataacatatattatttgagtatgcattatatgaactagtaaatgtagcagagagagtgtgtctgtgattaaactacttacaaattgaactc |
100 |
Q |
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| T |
1808201 |
cgaaaacttataacatgtattatttgagtatgcattatatgaactagtaaatgtagcagagagagtgtgtctgtgattaaactacttacaaattgaactc |
1808102 |
T |
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| Q |
101 |
cggtatcattaaggattccaattccagctgaaccaaaattggcaccaattagaagtttacgtccttttaattctgggctcaaatatggtaaagtagacac |
200 |
Q |
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| T |
1808101 |
cggtatcattaaggattccaattccagctgaaccaaaattggcaccaattagaagtttacgtccttttaattctgggctcaaatatggtaaagtagacac |
1808002 |
T |
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| Q |
201 |
agtaccaagttgc |
213 |
Q |
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||||||||||||| |
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| T |
1808001 |
agtaccaagttgc |
1807989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 48074788 - 48074724
Alignment:
| Q |
84 |
acttacaaattgaactccggtatcattaaggattccaattccagctgaaccaaaattggcaccaa |
148 |
Q |
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| T |
48074788 |
acttacaaattgaattccagtatcattgagaattccaattccagcagaagcgaaattggcaccaa |
48074724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 48101603 - 48101543
Alignment:
| Q |
83 |
tacttacaaattgaactccggtatcattaaggattccaattccagctgaaccaaaattggc |
143 |
Q |
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| T |
48101603 |
tacttacaaattgaactccagtatcgttgagaatgccaattccagctgaagcaaaattggc |
48101543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 48091878 - 48091814
Alignment:
| Q |
84 |
acttacaaattgaactccggtatcattaaggattccaattccagctgaaccaaaattggcaccaa |
148 |
Q |
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| T |
48091878 |
acttacaaactggattccggtatcattgagaattccaatgccagcggaagcaaaattggcaccaa |
48091814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 155
Target Start/End: Complemental strand, 48084188 - 48084117
Alignment:
| Q |
84 |
acttacaaattgaactccggtatcattaaggattccaattccagctgaaccaaaattggcaccaattagaag |
155 |
Q |
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| T |
48084188 |
acttacaaactggaatccggtatcattgagaattccaatcccagcggatgcaaagttggcaccaattagaag |
48084117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 86 - 148
Target Start/End: Original strand, 29768827 - 29768889
Alignment:
| Q |
86 |
ttacaaattgaactccggtatcattaaggattccaattccagctgaaccaaaattggcaccaa |
148 |
Q |
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| T |
29768827 |
ttacaaattgaatgccggtgtcattaagaattccaatcccagctgaagcaaaattggctccaa |
29768889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 84 - 158
Target Start/End: Original strand, 35358962 - 35359036
Alignment:
| Q |
84 |
acttacaaattgaactccggtatcattaaggattccaattccagctgaaccaaaattggcaccaattagaagttt |
158 |
Q |
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| T |
35358962 |
acttacaaattgaaatccggtatcattgagaattccaacacctgctgatgcaaaattggcaccaactaaaagttt |
35359036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 84 - 158
Target Start/End: Original strand, 35372231 - 35372305
Alignment:
| Q |
84 |
acttacaaattgaactccggtatcattaaggattccaattccagctgaaccaaaattggcaccaattagaagttt |
158 |
Q |
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| T |
35372231 |
acttacaaattgaattcctgtatcattaagaattccaacgcccgcagaagcaaaattggcaccaactaaaagttt |
35372305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 158
Target Start/End: Original strand, 35377880 - 35377954
Alignment:
| Q |
84 |
acttacaaattgaactccggtatcattaaggattccaattccagctgaaccaaaattggcaccaattagaagttt |
158 |
Q |
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|||||||||||||| ||| |||||||| || |||||||| || || || ||||||||||||||| || |||||| |
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| T |
35377880 |
acttacaaattgaaatccagtatcattgagaattccaatacccgcggatgcaaaattggcaccaactaaaagttt |
35377954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 86 - 155
Target Start/End: Original strand, 7387508 - 7387577
Alignment:
| Q |
86 |
ttacaaattgaactccggtatcattaaggattccaattccagctgaaccaaaattggcaccaattagaag |
155 |
Q |
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| T |
7387508 |
ttacaaattgaatcccagtgtcattgagtattccaattccagctgaagcaaaattagctccaactagaag |
7387577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 84 - 149
Target Start/End: Original strand, 6342778 - 6342843
Alignment:
| Q |
84 |
acttacaaattgaactccggtatcattaaggattccaattccagctgaaccaaaattggcaccaat |
149 |
Q |
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| T |
6342778 |
acttacaaattgaactccagtgtcattgagaattccaatcccagcagaagcaaagttagcaccaat |
6342843 |
T |
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