View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2649_low_5 (Length: 462)

Name: NF2649_low_5
Description: NF2649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2649_low_5
NF2649_low_5
[»] chr6 (3 HSPs)
chr6 (1-462)||(17933207-17933670)
chr6 (117-192)||(31209023-31209098)
chr6 (278-340)||(24662477-24662539)
[»] chr3 (3 HSPs)
chr3 (1-462)||(32844133-32844596)
chr3 (117-281)||(23876867-23877029)
chr3 (117-279)||(25535136-25535298)
[»] chr1 (3 HSPs)
chr1 (117-266)||(42559799-42559948)
chr1 (143-271)||(35008917-35009045)
chr1 (117-197)||(3370949-3371029)
[»] chr4 (2 HSPs)
chr4 (4-161)||(10542730-10542876)
chr4 (117-180)||(4613697-4613760)
[»] chr7 (5 HSPs)
chr7 (117-281)||(366771-366935)
chr7 (117-281)||(7401966-7402130)
chr7 (76-121)||(13034922-13034967)
chr7 (143-199)||(13034828-13034884)
chr7 (76-121)||(366945-366988)
[»] chr5 (3 HSPs)
chr5 (117-281)||(27075893-27076057)
chr5 (4-84)||(6114882-6114962)
chr5 (149-273)||(19997199-19997323)
[»] chr2 (3 HSPs)
chr2 (117-281)||(26584704-26584868)
chr2 (106-199)||(361600-361693)
chr2 (117-187)||(4046438-4046508)
[»] chr8 (1 HSPs)
chr8 (119-270)||(11788405-11788556)


Alignment Details
Target: chr6 (Bit Score: 368; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Complemental strand, 17933670 - 17933207
Alignment:
Q  1 agcttttagcgagaaggagaatagtcaggaatcggtttgatgtttctgaataaaatgcgaggatcgaaggatgggtaaaggaggggtaaaagaggaaaaa 100  Q
    |||||||||| | |||||||||||||| ||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  17933670 agcttttagctataaggagaatagtcaagaatcagtttgatgtttctaaataaaatgcgaggattgaaggatgggtaaaggaggggtaaaagaggaaaaa 17933571  T
Q  101 caacaaaaattgaaagtgaaatttgtatcgtttcaatcgaaatggtccttgtacacgtggaggactagatgacacgtggacatcacaacacatcatgcac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17933570 caacaaaaattgaaagtgaaatttgtatcgtttcaatcgaaatggtccttgtacacgtggaggactagatgacacgtggacatcacaacacatcatgcac 17933471  T
Q  201 attgacacattagcatcactaacagagagattggactgaggaatgaatttgacggacatgtgttaaattcagggactaattgggggacgaatttgattaa 300  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  17933470 attgacacattagcatcactaacagagagattggacagagggatgaatttgacggacatgtgttaaattcagggactaattggaggacgaatttgattaa 17933371  T
Q  301 tccttacaaactcaaggacgaagttgatgtttcactccta--nnnnnnnggtttgacactttgtgattcatacctttgttagcctttgttactcttgaag 398  Q
    ||||| |||||||||| |||||| ||||||||||||||||         |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  17933370 tccttgcaaactcaagaacgaaggtgatgtttcactcctatttttttttggtttgacactttgtgattcatgcctttgttagcctttgttactcttgaag 17933271  T
Q  399 aattgtgtgtaacttttattcaacaactcaagagaattaactatatgaataaatttgcatgtcc 462  Q
    ||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  17933270 aattgtgtgaaatttttattcaacaactaaagagaattaactatatgaataaatttgcatgtcc 17933207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 192
Target Start/End: Complemental strand, 31209098 - 31209023
Alignment:
Q  117 tgaaatttgtatcgtttcaatcgaaatggtccttgtacacgtggaggactagatgacacgtggacatcacaacaca 192  Q
    ||||||||||  | |||||||| |||||||||||||||||||||  |||| |||||||| || ||| |||| ||||    
T  31209098 tgaaatttgttgcttttcaatcaaaatggtccttgtacacgtggctgacttgatgacacatgtacaacacatcaca 31209023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 340
Target Start/End: Complemental strand, 24662539 - 24662477
Alignment:
Q  278 aattgggggacgaatttgattaatccttacaaactcaaggacgaagttgatgtttcactccta 340  Q
    |||||||||||||||||||   || | | |||| |||||||||||||||||| ||||||||||    
T  24662539 aattgggggacgaatttgacatattcgtgcaaattcaaggacgaagttgatgattcactccta 24662477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 32844133 - 32844596
Alignment:
Q  1 agcttttagcgagaaggagaatagtcaggaatcggtttgatgtttctgaataaaatgcgaggatcgaaggatgggtaaaggaggggtaaaagaggaaaaa 100  Q
    |||||||||||||||| ||| ||   ||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||    
T  32844133 agcttttagcgagaagaagagta---aggaatcggtttgatgtttctgaataaaatgtgaggattgaaggatgggtaaaagaggggtaaaagaggaaaaa 32844229  T
Q  101 caacaaaaat-tgaaagtgaaatttgtatcgtttcaatcgaaatggtccttgtacacgtggaggactagatgacacgtggacatcacaacacatcatgca 199  Q
    ||| |||||  || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  32844230 caaaaaaaaaatggaagtgaaatttgtatcgtttcaatcgaaatggtcgttgtacacgtggaggactagatgacacgtggacatcacagcacatcatgca 32844329  T
Q  200 cattgacacattagcatcactaacagagagattggactgaggaatgaatttgacggacatgtgttaaattcagggactaattgggggacgaatttgatta 299  Q
    ||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  32844330 cattgacacattagcatcactaacagagagattgggcagagggatgaatttgacggacatgtgttaaatttagggactaattggaggacgaatttgatta 32844429  T
Q  300 atccttacaaactcaaggacgaagttgatgtttcactcc----tannnnnnnggtttgacactttgtgattcatacctttgttagcctttgttactcttg 395  Q
    |||||| |||||||||||||||||||||||||||| |||    |        |||||||||||| ||||||||| |||||||||||||||||||||||||    
T  32844430 atccttgcaaactcaaggacgaagttgatgtttcattcctttttttttttttggtttgacacttagtgattcatgcctttgttagcctttgttactcttg 32844529  T
Q  396 aagaattgtgtgtaacttttattcaacaactcaagagaattaactatatgaataaatttgcatgtcc 462  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32844530 aagaattgtgtgtaatttttattcaacaactcaagagaattaactatatgaataaatttgcatgtcc 32844596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 117 - 281
Target Start/End: Original strand, 23876867 - 23877029
Alignment:
Q  117 tgaaatttgtatcgtttcaatcgaaatggtccttgtacacgtggaggactagatgacacgtggacatcacaacacatcatgcacattgacacattagcat 216  Q
    |||||||||||  ||||  ||| || ||||||||||||  ||||  ||||||||||||| ||||||||||||||||  ||| |    ||||| ||||| |    
T  23876867 tgaaatttgtaatgttttcatcaaattggtccttgtac--gtggctgactagatgacacatggacatcacaacacaaaatgtaggacgacacgttagcct 23876964  T
Q  217 cactaacagagagattggactgaggaatgaatttgacggacatgtgttaaattcagggactaatt 281  Q
    ||||||| ||| |||||||| |||| |||||||||| |||| | |||||||||||| ||||||||    
T  23876965 cactaacggagggattggacggagggatgaatttgatggacgtttgttaaattcagagactaatt 23877029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 117 - 279
Target Start/End: Original strand, 25535136 - 25535298
Alignment:
Q  117 tgaaatttgtatcgtttcaatcgaaatggtccttgtacacgtggaggactagatgacacgtggacatcacaacacatcatgcacattgacacattagcat 216  Q
    ||||||||||| |||||| ||| || ||||||||||| ||||||  |||| ||||||||||||||||||||||| | |||| |    ||||| | ||| |    
T  25535136 tgaaatttgtaacgtttccatcaaattggtccttgtagacgtggccgactggatgacacgtggacatcacaacaaagcatgtaggacgacacgtcagcct 25535235  T
Q  217 cactaacagagagattggactgaggaatgaatttgacggacatgtgttaaattcagggactaa 279  Q
      ||||  ||| | |||||| |||| |||||||||  |||| | |||||||||||||||||||    
T  25535236 tgctaatggaggggttggacggagggatgaatttggtggacgtctgttaaattcagggactaa 25535298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 117 - 266
Target Start/End: Original strand, 42559799 - 42559948
Alignment:
Q  117 tgaaatttgtatcgtttcaatcgaaatggtccttgtacacgtggaggactagatgacacgtggacatcacaacacatcatgcacattgacacattagcat 216  Q
    ||||||||||| |||||| ||| ||||||||||||||||| |||  |||| ||| ||||||||||||||||||||| |||| |    ||| ||| ||| |    
T  42559799 tgaaatttgtaacgtttccatcaaaatggtccttgtacacatggctgactggataacacgtggacatcacaacacaacatgtaggacgacgcatcagcct 42559898  T
Q  217 cactaacagagagattggactgaggaatgaatttgacggacatgtgttaa 266  Q
    |||||||||||||||||||| |||| |||||||||| |||| | ||||||    
T  42559899 cactaacagagagattggacggagggatgaatttgatggacgtctgttaa 42559948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 143 - 271
Target Start/End: Complemental strand, 35009045 - 35008917
Alignment:
Q  143 tggtccttgtacacgtggaggactagatgacacgtggacatcacaacacatcatgcacattgacacattagcatcactaacagagagattggactgagga 242  Q
    |||||| |||||||||||  |||| ||||||||||| ||| || |||||||||||||   |||||| | | ||||||||||| ||| ||||||| || |     
T  35009045 tggtccctgtacacgtggttgactggatgacacgtgtacaacataacacatcatgcatgatgacacctcaacatcactaacatagatattggacggatgg 35008946  T
Q  243 atgaatttgacggacatgtgttaaattca 271  Q
    |||||||||| | ||||  ||||||||||    
T  35008945 atgaatttgatgaacatcagttaaattca 35008917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 197
Target Start/End: Original strand, 3370949 - 3371029
Alignment:
Q  117 tgaaatttgtatcgtttcaatcgaaatggtccttgtacacgtggaggactagatgacacgtggacatcacaacacatcatg 197  Q
    ||||||||||| | ||||  || || || |||||||||||||||  |||| |||| |||||||||||||||| ||| ||||    
T  3370949 tgaaatttgtaacatttctgtcaaattgatccttgtacacgtggctgactggatggcacgtggacatcacaatacaacatg 3371029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 4 - 161
Target Start/End: Complemental strand, 10542876 - 10542730
Alignment:
Q  4 ttttagcgagaaggagaatagtcaggaatcggtttgatgtttctgaataaaatgcgaggatcgaaggatgggtaaaggaggggtaaaagaggaaaaacaa 103  Q
    |||||||||||||||||| | || || | ||||||||||||||||||| ||||| |||||| ||||||||||||||           ||||||||||       
T  10542876 ttttagcgagaaggagaagattcggggaccggtttgatgtttctgaattaaatgtgaggatggaaggatgggtaaa-----------agaggaaaaaatg 10542788  T
Q  104 caaaaattgaaagtgaaatttgtatcgtttcaatcgaaatggtccttgtacacgtgga 161  Q
     |||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||    
T  10542787 aaaaaattggaagtgaaatttgaatcgtttcaatcaaaatggtccttgtacacgtgga 10542730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 117 - 180
Target Start/End: Complemental strand, 4613760 - 4613697
Alignment:
Q  117 tgaaatttgtatcgtttcaatcgaaatggtccttgtacacgtggaggactagatgacacgtgga 180  Q
    |||||||||||  ||||||||| ||||  ||||||||||||||||||||  |||||||||||||    
T  4613760 tgaaatttgtaatgtttcaatcaaaatcatccttgtacacgtggaggacctgatgacacgtgga 4613697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 117 - 281
Target Start/End: Complemental strand, 366935 - 366771
Alignment:
Q  117 tgaaatttgtatcgtttcaatcgaaatggtccttgtacacgtggaggactagatgacacgtggacatcacaacacatcatgcacattgacacattagcat 216  Q
    ||||||||||| |||||| ||| || |||||||| |||||||||  |||  ||||||| ||||||||||||||||| |||||| |  ||||  | ||| |    
T  366935 tgaaatttgtaacgtttccatcaaattggtccttctacacgtggctgacgggatgacatgtggacatcacaacacaacatgcataacgacatgtcagcct 366836  T
Q  217 cactaacagagagattggactgaggaatgaatttgacggacatgtgttaaattcagggactaatt 281  Q
    ||||||| | | |||||||| |||| ||||||||||  ||| | |||||||||||||||||||||    
T  366835 cactaacggtgggattggacggagggatgaatttgatagacgtctgttaaattcagggactaatt 366771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 117 - 281
Target Start/End: Complemental strand, 7402130 - 7401966
Alignment:
Q  117 tgaaatttgtatcgtttcaatcgaaatggtccttgtacacgtggaggactagatgacacgtggacatcacaacacatcatgcacattgacacattagcat 216  Q
    ||||||||||  ||||||  || || ||||| ||||||||||||  |||| |||||| |||| ||| |||| |||| |||| | |  | ||| | |||||    
T  7402130 tgaaatttgttgcgtttccgtcaaattggtctttgtacacgtggctgactggatgacgcgtgtacaacacagcacaacatgaagagcggcacctcagcat 7402031  T
Q  217 cactaacagagagattggactgaggaatgaatttgacggacatgtgttaaattcagggactaatt 281  Q
    ||||||| |||| ||||||  |||  |||||||||| |||| | |||||||||||||||| ||||    
T  7402030 cactaacggagatattggatggagtgatgaatttgatggacgtctgttaaattcagggacgaatt 7401966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 13034967 - 13034922
Alignment:
Q  76 taaaggaggggtaaaagaggaaaaacaacaaaaattgaaagtgaaa 121  Q
    ||||||||||||||||||||||||| |  |||||||||||||||||    
T  13034967 taaaggaggggtaaaagaggaaaaatagaaaaaattgaaagtgaaa 13034922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 143 - 199
Target Start/End: Complemental strand, 13034884 - 13034828
Alignment:
Q  143 tggtccttgtacacgtggaggactagatgacacgtggacatcacaacacatcatgca 199  Q
    ||||||||||||||||||  |||||||||||||||| |||  |||||||| ||||||    
T  13034884 tggtccttgtacacgtggctgactagatgacacgtgtacaggacaacacagcatgca 13034828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 366988 - 366945
Alignment:
Q  76 taaaggaggggtaaaagaggaaaaacaacaaaaattgaaagtgaaa 121  Q
    |||| ||||||||||||||||||||||  |||||||||||||||||    
T  366988 taaaagaggggtaaaagaggaaaaaca--aaaaattgaaagtgaaa 366945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 117 - 281
Target Start/End: Complemental strand, 27076057 - 27075893
Alignment:
Q  117 tgaaatttgtatcgtttcaatcgaaatggtccttgtacacgtggaggactagatgacacgtggacatcacaacacatcatgcacattgacacattagcat 216  Q
    ||||||||||| |||||| ||| || |||||||| |||||||||  ||||| ||||||||||||||||| | |||||||||||   |||||| | | | |    
T  27076057 tgaaatttgtaacgtttccatcaaattggtccttatacacgtggctgactaaatgacacgtggacatcaaagcacatcatgcaggatgacacgtcaacct 27075958  T
Q  217 cactaacagagagattggactgaggaatgaatttgacggacatgtgttaaattcagggactaatt 281  Q
    ||||||| | | ||||| || |||| |||||||||| |||| | ||||||||||||| |||||||    
T  27075957 cactaacggggggattgaacggagggatgaatttgatggacgtctgttaaattcaggaactaatt 27075893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 6114962 - 6114882
Alignment:
Q  4 ttttagcgagaaggagaatagtcaggaatcggtttgatgtttctgaataaaatgcgaggatcgaaggatgggtaaaggagg 84  Q
    ||||||||  |||||||| ||||| | | ||| ||||||||||||||||||||| |||||| |||||||||||||| ||||    
T  6114962 ttttagcggaaaggagaagagtcaaggaccggattgatgtttctgaataaaatgtgaggatggaaggatgggtaaaagagg 6114882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 273
Target Start/End: Complemental strand, 19997323 - 19997199
Alignment:
Q  149 ttgtacacgtggaggactagatgacacgtggacatcacaacacatcatgcacattgacacattagcatcactaacagagagattggactgaggaatgaat 248  Q
    ||||||||||||  |||| |||||||||| ||||||||| |||| ||||||    ||||| | ||| ||||||||  || |||||||| || | ||||||    
T  19997323 ttgtacacgtggctgactggatgacacgttgacatcacagcacaacatgcaggacgacacgtcagcctcactaacgaagggattggacggaaggatgaat 19997224  T
Q  249 ttgacggacatgtgttaaattcagg 273  Q
    |||| | |  | |||||||||||||    
T  19997223 ttgatgaatgtctgttaaattcagg 19997199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 117 - 281
Target Start/End: Original strand, 26584704 - 26584868
Alignment:
Q  117 tgaaatttgtatcgtttcaatcgaaatggtccttgtacacgtggaggactagatgacacgtggacatcacaacacatcatgcacattgacacattagcat 216  Q
    ||||||||||| |||||| ||| || | ||| ||||||||||||  |||| ||||| ||||||||||||||||||| ||||||    ||||| | ||| |    
T  26584704 tgaaatttgtaacgtttccatcaaattcgtcattgtacacgtggctgactggatgatacgtggacatcacaacacaacatgcaggacgacacgtcagcct 26584803  T
Q  217 cactaacagagagattggactgaggaatgaatttgacggacatgtgttaaattcagggactaatt 281  Q
    ||||| ||||| || ||||| |||| |||||||||| |||| | | ||||||| ||||| |||||    
T  26584804 cactaccagagggaatggacggagggatgaatttgatggacgtctattaaattgagggattaatt 26584868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 106 - 199
Target Start/End: Complemental strand, 361693 - 361600
Alignment:
Q  106 aaaattgaaagtgaaatttgtatcgtttcaatcgaaatggtccttgtacacgtggaggactagatgacacgtggacatcacaacacatcatgca 199  Q
    |||||| ||| ||||||||||  | |||||||| |||||||||||||||||||||  |||| ||||||| ||| ||| |||| |||| ||||||    
T  361693 aaaatttaaaatgaaatttgttgcttttcaatcaaaatggtccttgtacacgtggctgacttgatgacatgtgtacaacacatcacaacatgca 361600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 187
Target Start/End: Complemental strand, 4046508 - 4046438
Alignment:
Q  117 tgaaatttgtatcgtttcaatcgaaatggtccttgtacacgtggaggactagatgacacgtggacatcaca 187  Q
    ||||||||||| |||||  ||| || ||||||||||| ||||||  |||||||||||||||| | ||||||    
T  4046508 tgaaatttgtaacgttttcatcaaattggtccttgtatacgtggctgactagatgacacgtgaaaatcaca 4046438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 119 - 270
Target Start/End: Complemental strand, 11788556 - 11788405
Alignment:
Q  119 aaatttgtatcgtttcaatcgaaatggtccttgtacacgtggaggactagatgacacgtggacatcacaacacatcatgcacattgacacattagcatca 218  Q
    ||||||||  |||||| ||| || |||||||||||||| |||  ||||| |||||||||| |||  |||||||| ||| ||    ||||| | |||||||    
T  11788556 aaatttgttgcgtttccatcaaattggtccttgtacacatggctgactatatgacacgtgtacaaaacaacacaacatacaagaagacacctcagcatca 11788457  T
Q  219 ctaacagagagattggactgaggaatgaatttgacggacatgtgttaaattc 270  Q
    |||||||||| ||||||| |||| |||||||||| |||| | ||||||||||    
T  11788456 ctaacagagatattggacggagggatgaatttgatggacgtctgttaaattc 11788405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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