View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2649_low_6 (Length: 441)
Name: NF2649_low_6
Description: NF2649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2649_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 40 - 431
Target Start/End: Original strand, 2868738 - 2869125
Alignment:
| Q |
40 |
atgttcgacatttctcaaatatgattaccctagatagcaattatgatatttt-ttaaagtgaaatcaaacttatgcttagacaatccatgtggctggttt |
138 |
Q |
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| T |
2868738 |
atgttcgacatttctcaaatatgattaccctagatatcaattatgatatttttttaaagtgaaatcaaacttatgcttagacaatccatgtggctggttt |
2868837 |
T |
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| Q |
139 |
tgtggacacatacaatcgtattatagttgacaaaaagtaggtcatgtgatgtgttcatcatgcatggcatggacacattgtgctgcttatagataaaatt |
238 |
Q |
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|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2868838 |
tgtggacacataaa-----attatagttgacaaaaagtaggtcatgtgatgtgttcatcatgcatggcatggacacattgtgctgcttatagataaaatt |
2868932 |
T |
|
| Q |
239 |
ggaatatatttgaaatcatcaataaggtatagtttagagtatgcctttcggtagtagaaaattattgagtaagagttaagattgtcacgcccgtcctnnn |
338 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2868933 |
ggaacatatttgaaatcatcaataaggtatagtttagagtatgcctttcggtagtagaaaattattgagtaagagttaagattgtcacgcgcgtcctaaa |
2869032 |
T |
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| Q |
339 |
nnnnngtaccttaattaatcatgttagtagcagacaaaacctaatgttgtacacgtagacagacaccaaagccaccaaacaaactctcctatg |
431 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2869033 |
aaaaagtaccttaattaatcatgttagtagcagacaaaacctaatgttgtacacgtagacagacaccaaagccaccaaacaaactctcctatg |
2869125 |
T |
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