View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2649_low_7 (Length: 431)
Name: NF2649_low_7
Description: NF2649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2649_low_7 |
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| [»] scaffold1425 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 8 - 416
Target Start/End: Original strand, 49276881 - 49277289
Alignment:
| Q |
8 |
gagcagagaaagagcgcctgaaccttgtcttaggttcacacctcgccacaatccatgaaacccttcaagttttagatcaaactcnnnnnnnnnnnnnnnn |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49276881 |
gagcagagaaagagcgcctgaaccttgtcttaggttcacacctcgccacaatccatgaaacccttcaagttttagatcaaactccttcttcttcttcttc |
49276980 |
T |
|
| Q |
108 |
nnnngttaacaaagtcacctgggaagatgtcattaagatggccgaacaagtttctaaacaagccaccacaggtactttcaactctttcacttttccattc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49276981 |
tttcgttaacaaagtcacctgggaagatgtcattaagatggccgaacaagtttctaaacaagccaccacaggtactttcaactctttcacttttccattc |
49277080 |
T |
|
| Q |
208 |
aatctgtctctttatttgaatatcataagctgtttctataagtgattttgtcagtggataagattaaataagtcaatcttatttactttctattcagttg |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
49277081 |
aatctgtctctttatttgaatatcataagctgtttctataagtgattatgtcagtggataagtttaaataagtcaatcttatttactttctattcagttg |
49277180 |
T |
|
| Q |
308 |
gaatgatttggactggagacaaaccggaatcaaaagctattgaggaaactatgacatcttacttcaacaatttacaaggttttctcttggtttctcatgg |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49277181 |
gaatgatttggactggagacaaaccggaatcaaaagctattgaggaaactatgacatcttacttcaacaatttacaaggttttctcttggtttctcatgg |
49277280 |
T |
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| Q |
408 |
aagcaaggt |
416 |
Q |
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| T |
49277281 |
aagcaaggt |
49277289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 116 - 195
Target Start/End: Complemental strand, 50484715 - 50484636
Alignment:
| Q |
116 |
acaaagtcacctgggaagatgtcattaagatggccgaacaagtttctaaacaagccaccacaggtactttcaactctttc |
195 |
Q |
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| T |
50484715 |
acaaagtaacatgggaagatgtcattaagatggctgaacaagtttccaaacaagccaccacaggtactttcaactctttc |
50484636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 116 - 195
Target Start/End: Complemental strand, 41637866 - 41637787
Alignment:
| Q |
116 |
acaaagtcacctgggaagatgtcattaagatggccgaacaagtttctaaacaagccaccacaggtactttcaactctttc |
195 |
Q |
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| T |
41637866 |
acaaagtaacctgggaagatgtcattaagatggctgaacaagtttccaaacaagccaccacaggtactttcaactctttc |
41637787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 114 - 178
Target Start/End: Original strand, 48499732 - 48499796
Alignment:
| Q |
114 |
taacaaagtcacctgggaagatgtcattaagatggccgaacaagtttctaaacaagccaccacag |
178 |
Q |
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| T |
48499732 |
taacaaagtaacctgggaagatgtcattaagatggttgaacaagtttctaaacaagccaccacag |
48499796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1425 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1425
Description:
Target: scaffold1425; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 346
Target Start/End: Original strand, 1395 - 1431
Alignment:
| Q |
310 |
atgatttggactggagacaaaccggaatcaaaagcta |
346 |
Q |
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|||||||||||||| ||||||| |||||||||||||| |
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| T |
1395 |
atgatttggactggggacaaactggaatcaaaagcta |
1431 |
T |
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