View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2651_high_11 (Length: 339)
Name: NF2651_high_11
Description: NF2651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2651_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 35364676 - 35364363
Alignment:
| Q |
18 |
tgatatgataataactacttctatgttgtggcattatatgaatggttgacacaaatgcaggggatataccagctgctactaaggaagatgttgaccttgc |
117 |
Q |
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||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
35364676 |
tgatatgataataactacttctatgttgtggcattgtgtgaatggttgacacacatgcaggggatatacctgctgctactaaggaagatgttgaccttgc |
35364577 |
T |
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| Q |
118 |
tgttgatgctgctaaaagagccatttccagaaacaaaggtagagattggtctactgcttctggttctgttcgtgctggctatcttcgagcaattgctgca |
217 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35364576 |
tgtggatgctgctaaaagagccatttccagaaacaaaggtagagattggtgtactgcttctggttctgttcgtgctggctatcttcgagcaattgctgca |
35364477 |
T |
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| Q |
218 |
aaggttctaatttcttgctggattgaagggactaataaactttattctatttttaagtgaaaaaccaatttatggtttgtttgaattgacttgaacttat |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
35364476 |
aaggttctaatttcttgctggattgaagggactaataaactttattctatttttaagtgtaaaaccaatttatggtttgtttgaattgacttgaacttat |
35364377 |
T |
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| Q |
318 |
ctactagtataatc |
331 |
Q |
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|||||||||||||| |
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| T |
35364376 |
ctactagtataatc |
35364363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 35382403 - 35382618
Alignment:
| Q |
18 |
tgatatgataataactacttctatgttgtggcattatatgaatggttgacacaaatgcaggggatataccagctgctactaaggaagatgttgaccttgc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35382403 |
tgatatgataataactacttctatgttgtggcattatatgaatggttgacacaaatgcaggggatataccagctgctactaaggaagatgttgaccttgc |
35382502 |
T |
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| Q |
118 |
tgttgatgctgctaaaagagccatttccagaaacaaaggtagagattggtctactgcttctggttctgttcgtgctggctatcttcgagcaattgctgca |
217 |
Q |
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||||||||||||||||||||||||||| || |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
35382503 |
tgttgatgctgctaaaagagccatttcaaggaacaaaggtaaagattggtccactgcttctggttctgttcgtgctggctatcttcgagcaatcgcttca |
35382602 |
T |
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| Q |
218 |
aaggttctaatttctt |
233 |
Q |
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|||||||||||||||| |
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| T |
35382603 |
aaggttctaatttctt |
35382618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 271
Target Start/End: Original strand, 35382637 - 35382672
Alignment:
| Q |
236 |
tggattgaagggactaataaactttattctattttt |
271 |
Q |
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|||||| ||||||||||||||||||||||||||||| |
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| T |
35382637 |
tggattaaagggactaataaactttattctattttt |
35382672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 329
Target Start/End: Complemental strand, 5083235 - 5083207
Alignment:
| Q |
301 |
aattgacttgaacttatctactagtataa |
329 |
Q |
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| T |
5083235 |
aattgacttgaacttatctactagtataa |
5083207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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