View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2651_high_15 (Length: 246)
Name: NF2651_high_15
Description: NF2651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2651_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 39581659 - 39581876
Alignment:
| Q |
19 |
aaaaggcaccaaagtctaaatatctctttccagggccatggaaattcatgaggtccaaattggtagtatgatttgtcgcggcgttcttataatggaaatt |
118 |
Q |
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| T |
39581659 |
aaaaggcaccaaagtctaaatatctctttccagggccatggaaattcatgaggtccaaattggtagtatgatttgtcgcgacgttcttataatggaaatt |
39581758 |
T |
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| Q |
119 |
gatcagaaatttgtggttccaatagacaatatatgtttttaggtaatataattaatttatatataacacgttcagtatcagtaacgttgatatcttatcc |
218 |
Q |
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| T |
39581759 |
gatcagaaatttgtggttccaatagacaatatatgtttttaggtaatataattaatttatatataacacgttcagtatcagtaacgttgatatcttatcc |
39581858 |
T |
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| Q |
219 |
acaactgatgaagtatat |
236 |
Q |
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| T |
39581859 |
acaactgatgaagtatat |
39581876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 236
Target Start/End: Original strand, 39525432 - 39525479
Alignment:
| Q |
189 |
ttcagtatcagtaacgttgatatcttatccacaactgatgaagtatat |
236 |
Q |
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| T |
39525432 |
ttcagtaacagtaacgttgctatctgatccacaactgatgaagtatat |
39525479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 133
Target Start/End: Original strand, 39577148 - 39577217
Alignment:
| Q |
63 |
ttcatgaggtccaaattggtagtatgatttgtcgcggcgttcttataatggaaattgatcagaaatttgtg |
133 |
Q |
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| T |
39577148 |
ttcatgaggtccaaactggtagtatgacttgttccgacgttcttgtaatgg-aatagatcagaaatttgtg |
39577217 |
T |
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