View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2651_high_17 (Length: 203)
Name: NF2651_high_17
Description: NF2651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2651_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 13 - 185
Target Start/End: Original strand, 39539406 - 39539578
Alignment:
| Q |
13 |
gattattctatagatacatattttgggaacactgacaagatggttgcagcaatgagagctttcaaaggggttgtacaaaactatttttgagtgaagagaa |
112 |
Q |
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| T |
39539406 |
gattattctatagatacatattttgggaacactgacaagatggttgcagcaatgagagctttcaaaggggttgtacaaaactatttttgagtgaagagaa |
39539505 |
T |
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| Q |
113 |
tttgctgaattaacctcacaaggtttgaagggaaaggagacaagccctaattgtgtccagcctaactacaatc |
185 |
Q |
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|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
39539506 |
tttgctgaattaacctcataaggtttgaagggaaaggatacaagccctaattgtgtcaagcctaactacaatc |
39539578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 13 - 185
Target Start/End: Complemental strand, 39519456 - 39519283
Alignment:
| Q |
13 |
gattattctatagatacatattttgggaacactgacaagatggttgcagcaatgagagctttcaaaggggttgtacaaaactatttttgagtg-aagaga |
111 |
Q |
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||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||| |
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| T |
39519456 |
gattattctatagatacatattttgggaacagggacaagattgttgcagcaatgagagctttcaaa-gggttgtacaaaactattttttagtgaaagaga |
39519358 |
T |
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| Q |
112 |
atttgctgaattaacctcacaaggtttgaagggaaaggagacaagccctaa-ttgtgtccagcctaactacaatc |
185 |
Q |
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| T |
39519357 |
attcgctgaattaacctcacaaggtttcaagggaaaggatacaagccctaacttgtgtcaaacctaactacaatc |
39519283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 2e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 27 - 136
Target Start/End: Complemental strand, 2552912 - 2552801
Alignment:
| Q |
27 |
tacatattttgggaacactgacaagatggttgcagcaatgagagctttcaaaggggttgtacaaaa--ctatttttgagt-gaagagaatttgctgaatt |
123 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||| |||||||| ||| |||||| |||||||||||| |
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| T |
2552912 |
tacatattttgggaacatggacaagatggttgcagcaatgagagctttcaaa-gggttgtataaaactctatttttaagtagaagaggatttgctgaatt |
2552814 |
T |
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| Q |
124 |
aacctcacaaggt |
136 |
Q |
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||||||||||||| |
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| T |
2552813 |
aacctcacaaggt |
2552801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 27 - 136
Target Start/End: Original strand, 2628331 - 2628442
Alignment:
| Q |
27 |
tacatattttgggaacactgacaagatggttgcagcaatgagagctttcaaaggggttgtacaaaa--ctatttttgagt-gaagagaatttgctgaatt |
123 |
Q |
| |
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|||||||||||| |||| |||||||||||||||||| ||||||||||||||| ||||||||| ||| ||| ||||| || |||||| |||||||||||| |
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| T |
2628331 |
tacatattttggaaacattgacaagatggttgcagctatgagagctttcaaa-gggttgtaccaaactctaattttgtgtagaagaggatttgctgaatt |
2628429 |
T |
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| Q |
124 |
aacctcacaaggt |
136 |
Q |
| |
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|||||||||||| |
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| T |
2628430 |
tacctcacaaggt |
2628442 |
T |
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