View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2651_high_8 (Length: 373)
Name: NF2651_high_8
Description: NF2651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2651_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 6e-93; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 125 - 301
Target Start/End: Original strand, 15927173 - 15927349
Alignment:
| Q |
125 |
aacaagttaaaagtgttatgaaattgcaagggttaattgaaagaatttgttttacaggcaataaaatcaaagtgagacctaattgtagagacttacatgc |
224 |
Q |
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| T |
15927173 |
aacaagttaaaagtgttatgaaattgcaagggttaattgaaagaatttgttttacaggcaataaaataaaagtgagacctaattgtagagacttacatgc |
15927272 |
T |
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| Q |
225 |
taagtaccacaaagtgtattcgttacaaaataacacaatggtaaaatacaactcaaatccaatgataaatgacaacc |
301 |
Q |
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| T |
15927273 |
taagtaccacaaagtgtattcgttacaaaataacacaatggtaaaatacaactcaaatccaatgataaatgacaacc |
15927349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 293 - 362
Target Start/End: Original strand, 15930760 - 15930829
Alignment:
| Q |
293 |
atgacaaccttgatgaatctcttctttataaactttagaacaaacttcttttcacctaacctgtttctct |
362 |
Q |
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| T |
15930760 |
atgacaaccttgatgaatctcttctttataaactttagagcaaacttctcttcacctaacctgtttctct |
15930829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 128 - 176
Target Start/End: Original strand, 15054239 - 15054287
Alignment:
| Q |
128 |
aagttaaaagtgttatgaaattgcaagggttaattgaaagaatttgttt |
176 |
Q |
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| T |
15054239 |
aagttataagtgttttgaaattgcaagggttaattgaaagaatttgttt |
15054287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 287
Target Start/End: Complemental strand, 14285743 - 14285695
Alignment:
| Q |
239 |
tgtattcgttacaaaataacacaatggtaaaatacaactcaaatccaat |
287 |
Q |
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| T |
14285743 |
tgtattagttacaaaataactcaatagtaaaatagaactcaaatccaat |
14285695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 362
Target Start/End: Original strand, 14777807 - 14777879
Alignment:
| Q |
291 |
aaatgacaaccttgatgaatctctt-ctttataaactttagaacaaacttcttttcacctaacctgtttctct |
362 |
Q |
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| T |
14777807 |
aaatgacaacattgatgaatcttttcctttatcatcttcagagcaaacttctcttcacctaatctgtttctct |
14777879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 246 - 289
Target Start/End: Complemental strand, 15025494 - 15025451
Alignment:
| Q |
246 |
gttacaaaataacacaatggtaaaatacaactcaaatccaatga |
289 |
Q |
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| T |
15025494 |
gttacaaaataacccaatagtaaaatacaactcaaatcctatga |
15025451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 362
Target Start/End: Complemental strand, 14285677 - 14285611
Alignment:
| Q |
296 |
acaaccttgatgaatctcttctttataaactttagaacaaacttcttttcacctaacctgtttctct |
362 |
Q |
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||||||||||||||||| | || ||| ||||| ||||||||||||| ||||||| | ||||||||| |
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| T |
14285677 |
acaaccttgatgaatctttcctctatcaacttcagaacaaacttctcttcacctgatttgtttctct |
14285611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 15054114 - 15054160
Alignment:
| Q |
41 |
catttagatcaacgaaagaaatcataaaaaatgattaaaattgataa |
87 |
Q |
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| T |
15054114 |
catttagagcaacgaaaggaaacataaaagatgattaaaattgataa |
15054160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 362
Target Start/End: Complemental strand, 34126651 - 34126579
Alignment:
| Q |
291 |
aaatgacaaccttgatgaatctctt-ctttataaactttagaacaaacttcttttcacctaacctgtttctct |
362 |
Q |
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|||||||||| ||||||||||| || |||||| | ||| ||| ||||||||| ||||||||| |||||||||| |
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| T |
34126651 |
aaatgacaacattgatgaatcttttcctttatcatcttcagagcaaacttctcttcacctaatctgtttctct |
34126579 |
T |
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