View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2651_low_10 (Length: 633)
Name: NF2651_low_10
Description: NF2651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2651_low_10 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 585; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 1 - 633
Target Start/End: Original strand, 10115736 - 10116368
Alignment:
| Q |
1 |
ttcattactgacttgagcattggggagctaacgtgccaccttttgtcccaccgcgaagactgatcgacacaataccggaacacatcctgccaccgttgca |
100 |
Q |
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| T |
10115736 |
ttcattactgacttgagcattggggagctaacgtgtcaccttttgtcccaccgcgaagactgatcgacacaataccggaacacatactgccaccgttgcc |
10115835 |
T |
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| Q |
101 |
tctcatccgtcctcaccgtacagatcaatattaatcactaagtttctccccaatgacaagtcatgcaattactacattttgcggagtaatagatttttag |
200 |
Q |
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| T |
10115836 |
tctcatccgtcctcaccggacagatcaatattaatcactaagtttctccccaatgacaagtcatgcaattactacattttgcggagtaatagatttttag |
10115935 |
T |
|
| Q |
201 |
catattatctgcctatgcttactattaccaccctgtaaaaaccctttaagataaactgattgctccttttgcatctaataacccaacacattaaaactaa |
300 |
Q |
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| T |
10115936 |
catattatctgcctatgcttactattaccaccctgtaaaaaccctttaaagtaaactgattactccttttgcatctaataacccaacacattaaaactaa |
10116035 |
T |
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| Q |
301 |
tttttcaaaaaagatcatgcaagtaaaaactaaatcaattaagatacttttttcttaatttgtgcacagagacaaagtttacaatcagcacatagtgaaa |
400 |
Q |
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| T |
10116036 |
tttttcaaaaaagatcatgcaagtaaaaactaaatcaattaagatacatttttcttaatttgtgcacagaaacaaagtttacaatcagcacatagtgaaa |
10116135 |
T |
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| Q |
401 |
ggtattagaggtttaagaattcagttagttagaaaaccctagtttaggggtaactaccttggttaacttgtaaaccaagcaatctagtttgttatggagt |
500 |
Q |
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| T |
10116136 |
ggtattagaggtttaagaattcagttagttagaaaaccctagtttaggggtaactaccttggttaacttgtaaaccaagcaatctagtttgttatggagt |
10116235 |
T |
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| Q |
501 |
tagttacatatctcaatttctctaagaaaccctaattccataatctagttttacacacaaacttgcactgtattctatcaaatggtggaagctaatgtaa |
600 |
Q |
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| T |
10116236 |
tagttacatatctcaatttctctaagaaaccctaattccataatctagttttacacacaaacttgcactgtgttctatcaaaaggtggaagctaatgtag |
10116335 |
T |
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| Q |
601 |
caatagagagaacagagaaactaaggctactta |
633 |
Q |
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| T |
10116336 |
caatagagagaacagagaaactaaggctactta |
10116368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 2e-44; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 403 - 517
Target Start/End: Complemental strand, 41591931 - 41591816
Alignment:
| Q |
403 |
tattagaggtttaagaattcagttagttaga-aaaccctagtttaggggtaactaccttggttaacttgtaaaccaagcaatctagtttgttatggagtt |
501 |
Q |
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| T |
41591931 |
tattacaggtttaagaattcaattagttagagaaaccctagtttagtggtaactaccttggttaacttgtaagccaagcaatctagtttgttatggagtt |
41591832 |
T |
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| Q |
502 |
agttacatatctcaat |
517 |
Q |
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| T |
41591831 |
agttacatatctcaat |
41591816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 511 - 580
Target Start/End: Complemental strand, 41591735 - 41591667
Alignment:
| Q |
511 |
tctcaatttctctaagaaaccctaattccataatctagttttacacacaaacttgcactgtattctatca |
580 |
Q |
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| T |
41591735 |
tctcaatttctctaagaa-ccctaattccataaactagttttacacacaaacttgcactttgttctatca |
41591667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 127
Target Start/End: Original strand, 19919160 - 19919250
Alignment:
| Q |
37 |
caccttttgtcccaccgcgaagactgatcgacacaataccggaacacatcctgccaccgttgcatctcatccgtcctcaccgtacagatca |
127 |
Q |
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| T |
19919160 |
cacctttcgttccaccacgaagactgatcgccaccataccggagcactttctgccaccattgcctctcatccattctcaccggacatatca |
19919250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 368
Target Start/End: Complemental strand, 12105886 - 12105824
Alignment:
| Q |
308 |
aaaaagatcatgcaagtaaaaa-ctaaatcaattaa-gatacttttttcttaatttgtgcaca |
368 |
Q |
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| T |
12105886 |
aaaaagatcatgcaagtaaaaagctaaatcaattaaggataaatttttcttaatttgagcaca |
12105824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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