View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2651_low_11 (Length: 572)

Name: NF2651_low_11
Description: NF2651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2651_low_11
NF2651_low_11
[»] chr7 (5 HSPs)
chr7 (19-562)||(1715680-1716211)
chr7 (348-530)||(18446568-18446743)
chr7 (354-529)||(2576970-2577148)
chr7 (354-530)||(26389164-26389324)
chr7 (451-527)||(1773526-1773601)
[»] chr5 (4 HSPs)
chr5 (354-529)||(4215223-4215401)
chr5 (445-529)||(37498203-37498286)
chr5 (447-529)||(18587363-18587443)
chr5 (348-419)||(18587483-18587555)
[»] chr8 (9 HSPs)
chr8 (354-529)||(19472483-19472660)
chr8 (354-529)||(19543408-19543585)
chr8 (354-529)||(19589111-19589288)
chr8 (448-529)||(3788500-3788580)
chr8 (349-531)||(3479030-3479214)
chr8 (354-517)||(3785802-3785968)
chr8 (349-515)||(31909113-31909282)
chr8 (492-529)||(12062900-12062937)
chr8 (448-529)||(35416089-35416168)
[»] chr6 (3 HSPs)
chr6 (376-530)||(33638777-33638934)
chr6 (448-529)||(21146819-21146899)
chr6 (448-522)||(9664639-9664711)
[»] chr4 (2 HSPs)
chr4 (355-526)||(46432433-46432606)
chr4 (448-523)||(55849425-55849499)
[»] chr1 (4 HSPs)
chr1 (414-529)||(12685139-12685256)
chr1 (357-526)||(16385556-16385728)
chr1 (446-530)||(27356018-27356101)
chr1 (354-392)||(12685090-12685129)
[»] scaffold0016 (1 HSPs)
scaffold0016 (354-531)||(48379-48562)
[»] chr3 (5 HSPs)
chr3 (446-529)||(51306418-51306499)
chr3 (448-529)||(51308882-51308961)
chr3 (457-529)||(20868777-20868847)
chr3 (448-522)||(27462198-27462270)
chr3 (446-530)||(447069-447153)
[»] chr2 (2 HSPs)
chr2 (448-530)||(26608007-26608086)
chr2 (355-530)||(20509106-20509283)


Alignment Details
Target: chr7 (Bit Score: 407; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 19 - 562
Target Start/End: Complemental strand, 1716211 - 1715680
Alignment:
Q  19 tgacaagtgggtgattattagcagcatgtgtttaatcatgctcaaagtgtcgacaaacaacttgtgatgatgaagcatccactcataagtcatgacatac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1716211 tgacaagtgggtgattattagcagcatgtgtttaatcatgctcaaagtgtcgacaaacaacttgtgatgatgaagcatccactcataagtcatgacatac 1716112  T
Q  119 aagattgtctgtttcatggttaaattcattctttctcagagtaatttgttggtgtgattcatatttaagattgttttccacgtgacatagacatattaaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1716111 aagattgtctgtttcatggttaaattcattctttctcagagtaatttgttggtgtgattcatatttaagattgttttccacgtgacatagacatattaaa 1716012  T
Q  219 atatgatgcaaataaagtgacagcttagatggtaaatttgaacctatttgattttacaggtgacacaaatataatgcagaaaattataaccctcaaatga 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1716011 atatgatgcaaataaagtgacagcttagatggtaaatttgaacctatttgattttacaggtgacacaaatataatgcagaaaattataaccctcaaatga 1715912  T
Q  319 actgaaattctannnnnnnnaaaagaactaatgtagaaatatagttagttatactcatttagagttagttagtgcattagttcggtcactatatgagtca 418  Q
    ||||||||||||        |||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |   ||| |||||||||| ||| |    
T  1715911 actgaaattcta-tttttttaaaagaactaatgttgaaatatagttagttatactcatttagagttagtcagtgcgt---ttcagtcactatataagtta 1715816  T
Q  419 ctagttgactcttttgtatctgtctt----cttttgtatcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatg 514  Q
    ||||||||||||||||||||| ||||    ||||| ||||||||||||||||||||||||||||||            ||||||||||||||||||||||    
T  1715815 ctagttgactcttttgtatctctcttttcacttttatatcatttcaactattatcaatacaataac------------tttctctccattttcatggatg 1715728  T
Q  515 ccatgtttctcaacaactaacaaaaatataaacatgaattagcctatg 562  Q
     |||||||||||||||||||||||||||||||||||||||||| ||||    
T  1715727 tcatgtttctcaacaactaacaaaaatataaacatgaattagcttatg 1715680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 348 - 530
Target Start/End: Original strand, 18446568 - 18446743
Alignment:
Q  348 aatgtagaaatatagttagttatactcattt-agagttagttagtgcattagttcggtcactatatgagtcactagttgactcttttgtatctgtctt-- 444  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||| ||||||||||||| || ||||||||| ||||      
T  18446568 aatgttgaaatatagttagttatactcattttagagttagttagtgcactagttcagtcactatataagtcactagttgattc-tttgtatctttctttc 18446666  T
Q  445 -cttttgtatcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgccatgtttctcaacaa 530  Q
     |||||||||||||||||||||||||||||||||          ||||||||||||| ||||||||||||||||||||| |||||||    
T  18446667 acttttgtatcatttcaactattatcaatacaat----------agctttttctctctattttcatggatgccatgtttttcaacaa 18446743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 354 - 529
Target Start/End: Original strand, 2576970 - 2577148
Alignment:
Q  354 gaaatatagttagttatactcattt-agagttagttagtgcattagttcggtcactatatgagtcactagttgactcttttgtatctgtcttc---tttt 449  Q
    ||||||||| |||| |||||||||| |||||||||||| | | ||||   |||||||||| |||||| ||||||||| ||||||||  | ||    | ||    
T  2576970 gaaatatagatagtgatactcattttagagttagttagggtactagtatagtcactatataagtcacaagttgactcatttgtatcactttttcattctt 2577069  T
Q  450 gtatcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgccatgtttctcaaca 529  Q
    |||||||||||||||||||||||||||||| ||||| |||||| ||||||| ||||||||||||||||||||||||||||    
T  2577070 gtatcatttcaactattatcaatacaataattttct-aagcttcttctctctattttcatggatgccatgtttctcaaca 2577148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 354 - 530
Target Start/End: Original strand, 26389164 - 26389324
Alignment:
Q  354 gaaatatagttagttatactcattt-agagttagttagtgcattagttcggtcactatatgagtcactagttgactcttttgtatctgtcttcttttgta 452  Q
    ||||||||| ||||||||||||||| |||||||||||||| | |||||  |||||||||| |||||| ||||||||||||||||||| |               
T  26389164 gaaatataggtagttatactcattttagagttagttagtgtactagtttagtcactatataagtcacaagttgactcttttgtatctct----------- 26389252  T
Q  453 tcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgccatgtttctcaacaa 530  Q
         |||||||||||||||||||||| ||||||| | |||||||||| |||||||||||||||||||||||||||||    
T  26389253 -----tcaactattatcaatacaataattttctaa-gttttttctctctattttcatggatgccatgtttctcaacaa 26389324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 451 - 527
Target Start/End: Complemental strand, 1773601 - 1773526
Alignment:
Q  451 tatcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgccatgtttctcaa 527  Q
    ||||||||| ||||||||||||||||||||||| | |||||||| ||||| ||||| ||||||| ||||||||||||    
T  1773601 tatcatttctactattatcaatacaataactttgt-aagcttttactctctatttttatggatgtcatgtttctcaa 1773526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 127; Significance: 3e-65; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 354 - 529
Target Start/End: Original strand, 4215223 - 4215401
Alignment:
Q  354 gaaatatagttagttatactcatttagagttagttagtgcattagttcggtcactatatgagtcactagttgactcttttgtatctgtctt----ctttt 449  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||| ||||| |||||||||||||||||||| ||||    |||||    
T  4215223 gaaatatagttagttatactcatttagagttagttagtgcactagttgagtcactatataagtcattagttgactcttttgtatctctcttttcactttt 4215322  T
Q  450 gtatcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgccatgtttctcaaca 529  Q
     ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4215323 atatcatttcaactattatcaatacaataactttct-aagctttttctctccattttcatggatgccatgtttctcaaca 4215401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 445 - 529
Target Start/End: Complemental strand, 37498286 - 37498203
Alignment:
Q  445 cttttgtatcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgccatgtttctcaaca 529  Q
    ||||| ||||||||||||||| |||||||||||||  |||||| | |||||||||||||||||||||||||||| ||||||||||    
T  37498286 cttttatatcatttcaactatcatcaatacaataatcttctaa-gttttttctctccattttcatggatgccatatttctcaaca 37498203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 447 - 529
Target Start/End: Complemental strand, 18587443 - 18587363
Alignment:
Q  447 tttgtatcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgccatgtttctcaaca 529  Q
    |||||||||||| |||||| ||||||| || |  ||||||| | |||||||||| |||| |||||||||||||||||||||||    
T  18587443 tttgtatcattttaactatcatcaatataa-atttttctaa-gttttttctctctatttccatggatgccatgtttctcaaca 18587363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 348 - 419
Target Start/End: Complemental strand, 18587555 - 18587483
Alignment:
Q  348 aatgtagaaatatagttagttatactcattt-agagttagttagtgcattagttcggtcactatatgagtcac 419  Q
    ||||| ||||||||| |||||||||| |||| |||||||||||| | | ||||| ||| ||||||| ||||||    
T  18587555 aatgttgaaatataggtagttatacttattttagagttagttagggtactagttaggttactatataagtcac 18587483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 354 - 529
Target Start/End: Complemental strand, 19472660 - 19472483
Alignment:
Q  354 gaaatatagttagttatactcattt-agagttagtta-gtgcattagttcggtcactatatgagtcactagttgactcttttgtatctgtctt-cttttg 450  Q
    ||||||||| |||| |||||||||| ||||||||||| | | | ||||   |||||||||| |||||| |||||||||||||||| || | |  ||||||    
T  19472660 gaaatatagatagtaatactcattttagagttagttaagggtactagtgtagtcactatatcagtcacaagttgactcttttgtaactctttcacttttg 19472561  T
Q  451 tatcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgccatgtttctcaaca 529  Q
    |||||||||||||||| |||||| ||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  19472560 tatcatttcaactattttcaatataataa-tttcttaagctttttctctctattttcatggatgccatgtttctcaaca 19472483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 354 - 529
Target Start/End: Complemental strand, 19543585 - 19543408
Alignment:
Q  354 gaaatatagttagttatactcattt-agagttagtta-gtgcattagttcggtcactatatgagtcactagttgactcttttgtatctgtctt-cttttg 450  Q
    ||||||||| |||| |||||||||| ||||||||||| | | | ||||   |||||||||| |||||| |||||||||||||||| || | |  ||||||    
T  19543585 gaaatatagatagtaatactcattttagagttagttaagggtactagtgtagtcactatatcagtcacaagttgactcttttgtaactctttcacttttg 19543486  T
Q  451 tatcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgccatgtttctcaaca 529  Q
    |||||||||||||||| |||||| ||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  19543485 tatcatttcaactattttcaatataataa-tttcttaagctttttctctctattttcatggatgccatgtttctcaaca 19543408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 354 - 529
Target Start/End: Original strand, 19589111 - 19589288
Alignment:
Q  354 gaaatatagttagttatactcattt-agagttagtta-gtgcattagttcggtcactatatgagtcactagttgactcttttgtatctgtctt-cttttg 450  Q
    ||||||||| |||| |||||||||| ||||||||||| | | | ||||   |||||||||| |||||| |||||||||||||||| || | |  ||||||    
T  19589111 gaaatatagatagtaatactcattttagagttagttaagggtactagtgtagtcactatatcagtcacaagttgactcttttgtaactctttcacttttg 19589210  T
Q  451 tatcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgccatgtttctcaaca 529  Q
    |||||||||||||||| |||||| ||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  19589211 tatcatttcaactattttcaatataataa-tttcttaagctttttctctctattttcatggatgccatgtttctcaaca 19589288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 448 - 529
Target Start/End: Complemental strand, 3788580 - 3788500
Alignment:
Q  448 ttgtatcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgccatgtttctcaaca 529  Q
    |||||||||||||||||||||||||||||||| |||||||| ||| ||||||| ||||||||||||||||||||||||||||    
T  3788580 ttgtatcatttcaactattatcaatacaataattttctaaa-cttcttctctctattttcatggatgccatgtttctcaaca 3788500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 349 - 531
Target Start/End: Original strand, 3479030 - 3479214
Alignment:
Q  349 atgtagaaatatagttagttatactcattt-agagttagttagtgcattagttcggtcactatatgagtcactagttgactcttttgtatctgtctt--- 444  Q
    |||| ||||||||| ||||||||||||||| |||||||||||| | |||||||  ||| ||| || |||||| ||||||||| |||||| |  ||||       
T  3479030 atgttgaaatatagatagttatactcattttagagttagttagggtattagtttagtccctacataagtcacaagttgactcatttgtaccgctctttca 3479129  T
Q  445 cttttgtatcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgccatgtttctcaacaac 531  Q
    || ||| ||| |||||||||||||||||||| ||| ||| |||   ||||| |||| ||||||||||||| ||||||||||||||||    
T  3479130 ctgttgcatcttttcaactattatcaatacagtaattttttaa--gtttttttctctattttcatggatgtcatgtttctcaacaac 3479214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 354 - 517
Target Start/End: Complemental strand, 3785968 - 3785802
Alignment:
Q  354 gaaatatagttagttatactcattt-agagttagttagtgcattagttcggtcactatatgagtcactagttgactcttttgtatc--tgtcttctt-tt 449  Q
    ||||||||| |||| |||||||||| |||||||||||| | | || |   |||||||||| |||||| ||||||||| ||||||||  | | || || ||    
T  3785968 gaaatatagatagtgatactcattttagagttagttagggtactactatagtcactatataagtcacaagttgactcatttgtatcacttttttattctt 3785869  T
Q  450 gtatcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgcca 517  Q
    |||||||||||||||||||||||||||||| ||||  |||||| ||||||| ||||||||||||||||    
T  3785868 gtatcatttcaactattatcaatacaataa-tttcctaagcttcttctctctattttcatggatgcca 3785802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 349 - 515
Target Start/End: Complemental strand, 31909282 - 31909113
Alignment:
Q  349 atgtagaaatatagttagttatactcattt-agagttagttagtgcattagttcggtcactatatgagtcactagttgactcttttgtatctgtct---t 444  Q
    |||| ||||||||| |||| |||||||||| ||||| |||||  | | |||||  |||||||||| |||||| ||||||||| |||||| || |||   |    
T  31909282 atgttgaaatatagatagtaatactcattttagagtaagttaaggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctcttt 31909183  T
Q  445 c-ttttgtatcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgc 515  Q
    | ||||||||| |||||||||| |||||||||||| |||| | |||| ||||||||| ||||||||||||||    
T  31909182 cattttgtatcttttcaactatcatcaatacaatagctttgt-aagc-ttttctctctattttcatggatgc 31909113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 492 - 529
Target Start/End: Original strand, 12062900 - 12062937
Alignment:
Q  492 ttttctctccattttcatggatgccatgtttctcaaca 529  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  12062900 ttttctctctattttcatggatgccatgtttctcaaca 12062937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 529
Target Start/End: Complemental strand, 35416168 - 35416089
Alignment:
Q  448 ttgtatcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgccatgtttctcaaca 529  Q
    |||||||||||||||||  || |||||||||  ||| | |||||||| ||||| ||||| ||||||||||||||||| ||||    
T  35416168 ttgtatcatttcaactaccattaatacaatagtttt-tcaagctttt-ctctctatttttatggatgccatgtttcttaaca 35416089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 7e-29; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 376 - 530
Target Start/End: Complemental strand, 33638934 - 33638777
Alignment:
Q  376 tttagagttagttagtgcattagttcggtcactatatgagtcactagttgactcttttgtatctgtctt----cttttgtatcatttcaactattatcaa 471  Q
    ||||||||||||||||| |||||||   ||  ||||| |||||  ||||||||||||||||||| ||||    ||||||||||  ||||| |||||||||    
T  33638934 tttagagttagttagtgtattagtttaatcgttatataagtcataagttgactcttttgtatctctcttttaacttttgtatctcttcaattattatcaa 33638835  T
Q  472 tacaataactttctaaagctttttctctccattttcatggatgccatgtttctcaacaa 530  Q
     ||||||| |||| |||| |||||||||| |||||||||||||||||||||||||||||    
T  33638834 gacaataattttc-aaagttttttctctctattttcatggatgccatgtttctcaacaa 33638777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 448 - 529
Target Start/End: Complemental strand, 21146899 - 21146819
Alignment:
Q  448 ttgtatcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgccatgtttctcaaca 529  Q
    ||||||||||||||||||| |||||||||||| ||||| ||| |||||||||| ||||||||||||| ||||||||| ||||    
T  21146899 ttgtatcatttcaactattttcaatacaataattttct-aagttttttctctctattttcatggatgacatgtttcttaaca 21146819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 448 - 522
Target Start/End: Complemental strand, 9664711 - 9664639
Alignment:
Q  448 ttgtatcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgccatgttt 522  Q
    |||||||||||||||||| ||||||||||| | ||| | |||| ||||||||| || | ||||||||||||||||    
T  9664711 ttgtatcatttcaactataatcaatacaat-agtttttcaagc-ttttctctctatatccatggatgccatgttt 9664639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 7e-29; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 355 - 526
Target Start/End: Original strand, 46432433 - 46432606
Alignment:
Q  355 aaatatagttagttatactcattt-agagttagttagtgcattagttcggtcactatatgagtcactagttgactcttttgtatctgtctt---cttttg 450  Q
    |||| ||||||||||||||||||| |||||||||||||||| || ||  |||||  ||  |||||||||||||||||||| ||||  ||||   ||||||    
T  46432433 aaatgtagttagttatactcattttagagttagttagtgcactaatttagtcaccgtaaaagtcactagttgactcttttatatccctctttcacttttg 46432532  T
Q  451 tatcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgccatgtttctca 526  Q
    ||||||||  ||||||||||||||||||| ||| | |||||||| ||||| ||||||||||||| |||||||||||    
T  46432533 tatcatttttactattatcaatacaataattttgt-aagcttttcctctctattttcatggatg-catgtttctca 46432606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 448 - 523
Target Start/End: Complemental strand, 55849499 - 55849425
Alignment:
Q  448 ttgtatcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgccatgtttc 523  Q
    |||||||||||||||||| ||||||||||||  ||||  |||| ||||||||| || | |||||||||||||||||    
T  55849499 ttgtatcatttcaactatcatcaatacaatagttttcccaagc-ttttctctctatatccatggatgccatgtttc 55849425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 6e-26; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 414 - 529
Target Start/End: Original strand, 12685139 - 12685256
Alignment:
Q  414 agtcactagttgactcttttgtatctgtctt---cttttgtatcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatg 510  Q
    |||||||||||||||||||||||||| ||||   ||||| ||||||||  ||||||||||||| ||||||||||| |||| ||| ||||| ||||| |||    
T  12685139 agtcactagttgactcttttgtatctctctttaacttttatatcattttcactattatcaatataataactttct-aagcctttcctctctatttttatg 12685237  T
Q  511 gatgccatgtttctcaaca 529  Q
    |||||||||||||||||||    
T  12685238 gatgccatgtttctcaaca 12685256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 357 - 526
Target Start/End: Original strand, 16385556 - 16385728
Alignment:
Q  357 atatagttagttatactcattt-agagttagttagtgcattagttcggtcactatatgagtcactagttgactcttttgtatctgtcttc---ttttgta 452  Q
    |||||| ||||||||||||||| |||||||||||| | | |||||  |||||| ||| |||||| ||||||||| ||||||  | ||||    |||||||    
T  16385556 atatagatagttatactcattttagagttagttagggtactagtttagtcactgtataagtcacaagttgactcatttgtacatctctttcatttttgta 16385655  T
Q  453 tcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgccatgtttctca 526  Q
    ||||||   |||| ||||||||||||||||| ||| ||||||||| || |||||||||||||||||||||||||    
T  16385656 tcattttccctataatcaatacaataactttgtaa-gctttttctttctattttcatggatgccatgtttctca 16385728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 446 - 530
Target Start/End: Complemental strand, 27356101 - 27356018
Alignment:
Q  446 ttttgtatcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgccatgtttctcaacaa 530  Q
    |||||||||||||  ||||| |||||||||||||| || ||| | ||||||||||  ||||||||| | ||||||||||||||||    
T  27356101 ttttgtatcattttcactatcatcaatacaataaccttttaa-gttttttctctcttttttcatgggtaccatgtttctcaacaa 27356018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 392
Target Start/End: Original strand, 12685090 - 12685129
Alignment:
Q  354 gaaatatagttagttatactca-tttagagttagttagtg 392  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  12685090 gaaatatagttagttatactcattttagagttagttagtg 12685129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 354 - 531
Target Start/End: Original strand, 48379 - 48562
Alignment:
Q  354 gaaatatagttagttatactcattt-agagttagtta-gtgcattagttcggtcactatatgagtcactagttgactcttttgtatctgtcttct----t 447  Q
    ||||||||| ||||||||||||||| ||||||||||| | | ||||||    ||||||||| |||||| |||||| ||||||||| || |||| |    |    
T  48379 gaaatataggtagttatactcattttagagttagttaagggtattagtgtattcactatataagtcacaagttgattcttttgtaactatcttttcaatt 48478  T
Q  448 ttgtatcatttcaactattatcaatacaataactttctaaagcttt-ttctctccattttcatggatgccatgtttctcaacaac 531  Q
    |||||||  |||||| |||||||||||||||| ||||| ||||||| ||||||| | ||||||||||| ||||||||||||||||    
T  48479 ttgtatcccttcaacaattatcaatacaataattttct-aagctttcttctctctactttcatggatgtcatgtttctcaacaac 48562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 6e-23; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 446 - 529
Target Start/End: Original strand, 51306418 - 51306499
Alignment:
Q  446 ttttgtatcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgccatgtttctcaaca 529  Q
    ||||||||||||| |||||||||||||||||||| ||||||| |||||||||||| ||||||||||||| ||||||||||||||    
T  51306418 ttttgtatcattttaactattatcaatacaataa-tttctaa-gctttttctctctattttcatggatgtcatgtttctcaaca 51306499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 448 - 529
Target Start/End: Original strand, 51308882 - 51308961
Alignment:
Q  448 ttgtatcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgccatgtttctcaaca 529  Q
    |||||||||||||||||||||||||||||||| ||| ||| |||||||||||| ||||||||||||| ||||||||||||||    
T  51308882 ttgtatcatttcaactattatcaatacaataa-tttataa-gctttttctctctattttcatggatgtcatgtttctcaaca 51308961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 457 - 529
Target Start/End: Original strand, 20868777 - 20868847
Alignment:
Q  457 ttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgccatgtttctcaaca 529  Q
    ||||||||| ||||||||||||  ||||||| |||||| |||||  ||||||||||||||||||||| |||||    
T  20868777 ttcaactatcatcaatacaatagttttctaa-gctttt-ctctctcttttcatggatgccatgtttcccaaca 20868847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 448 - 522
Target Start/End: Original strand, 27462198 - 27462270
Alignment:
Q  448 ttgtatcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgccatgttt 522  Q
    |||||||||||||||||| ||||||||||||  ||||  |||| ||||||||| || | ||||||||||||||||    
T  27462198 ttgtatcatttcaactataatcaatacaatagttttc-caagc-ttttctctctatatccatggatgccatgttt 27462270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 446 - 530
Target Start/End: Complemental strand, 447153 - 447069
Alignment:
Q  446 ttttgtatcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgccatgtttctcaacaa 530  Q
    |||| ||||||||||||||  || ||||||| | |||| |||   |||||||||| | |||||||||| |||||||||| |||||    
T  447153 ttttctatcatttcaactaccataaatacaacagctttgtaagtttttttctctctagtttcatggataccatgtttcttaacaa 447069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 448 - 530
Target Start/End: Complemental strand, 26608086 - 26608007
Alignment:
Q  448 ttgtatcattt-caactattatcaatacaataactttctaaagctttttctctccattttcatggatgccatgtttctcaacaa 530  Q
    ||||||||||| ||||||| ||||||||||||  ||||||| |||||| ||||| ||||||||||||| ||||||||| |||||    
T  26608086 ttgtatcattttcaactatcatcaatacaata--tttctaa-gctttt-ctctctattttcatggatgtcatgtttcttaacaa 26608007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 530
Target Start/End: Complemental strand, 20509283 - 20509106
Alignment:
Q  355 aaatatagttagttatactcattt-agagttagttagtgc-attagttcggtcactatatgagtcactagttgactcttttgtatctgtcttc---tttt 449  Q
    |||||||  ||||||||||||||| |||||||||||| |  | |||||  |||| ||||| ||| || ||||||||| ||| ||||| ||||    ||||    
T  20509283 aaatataagtagttatactcattttagagttagttaggggtactagtttagtcaatatataagttacaagttgactcatttatatctctctttcattttt 20509184  T
Q  450 gtatcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgccatgtttctcaacaa 530  Q
    ||||  ||||||||| |||| ||| ||||| |||| |  | | |||||||| ||||||||||||| |||||||||||||||    
T  20509183 gtat--tttcaactagtatcgatataataattttcgac-gttgtttctctctattttcatggatgtcatgtttctcaacaa 20509106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University