View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2651_low_13 (Length: 467)
Name: NF2651_low_13
Description: NF2651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2651_low_13 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 15 - 467
Target Start/End: Complemental strand, 17443517 - 17443065
Alignment:
| Q |
15 |
aatattacccttccagcacctcctgtatttacaggaaagaaatatgaaatctggtctgtgaagatgaagactcatttgagggcatatgatctttgggaag |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17443517 |
aatattacccttccagcacctcctgtatttacaggaaagaaatatgaaatctggtctgtgaagatgaagactcatttgagggcatatgatctttgggaag |
17443418 |
T |
|
| Q |
115 |
tggtggaaacagctgctgaaccaccacctttgcaagaaaatccaactgttgctcaaatgaaataccacagtgagcaagttgccaagagagctaaggctct |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17443417 |
tggtggaaacagctgctgaaccaccacctttgcaagaaaatccaactgttgctcaaatgagataccacagtgagcaagttgccaagagagctaaggctct |
17443318 |
T |
|
| Q |
215 |
taccatccttcactctgctgtgaatgatgatgtttttatgagaatctcacacttggagacagcaaaacaagtttgggaaaagctagaagaaaagtttttt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
17443317 |
taccatccttcactctgctgtgaatgatgatgttttcatgagaatctcacacttggagacagcaaaacaagtttgggaaaagctagaagaagagtttttt |
17443218 |
T |
|
| Q |
315 |
gggaatgaaagaaccaagcagatgcaggttctaaatctcaaaagagagtttgaagccttaaagatgaatgaggctgaaaacataaatgatttcatgacga |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
17443217 |
gggaatgaaagaaccaagcagatgcaggttctaaatctcaaaagagagtttgaagccttaaagatgaatgaggctgaaaacataattgatttcatgacga |
17443118 |
T |
|
| Q |
415 |
aagtgatgaaagttgtgaatcaaatcaggttgttgggagaacaatttcttgat |
467 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
17443117 |
aagttatgaaagttgtgaatcaaatcagattgttgggagaacaatttcttgat |
17443065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 15 - 467
Target Start/End: Original strand, 3058683 - 3059135
Alignment:
| Q |
15 |
aatattacccttccagcacctcctgtatttacaggaaagaaatatgaaatctggtctgtgaagatgaagactcatttgagggcatatgatctttgggaag |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3058683 |
aatattacccttccagcacctcctgtatttacaggaaagaaatatgaaatctggtctgtgaagatgaagactcatttgagggcatatgatctttgggaag |
3058782 |
T |
|
| Q |
115 |
tggtggaaacagctgctgaaccaccacctttgcaagaaaatccaactgttgctcaaatgaaataccacagtgagcaagttgccaagagagctaaggctct |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3058783 |
tggtggaaacagctgctgaaccaccacctttgcaagaaaatccaactgttgctcaaatgagataccacagtgagcaagttgccaagagagctaaggctct |
3058882 |
T |
|
| Q |
215 |
taccatccttcactctgctgtgaatgatgatgtttttatgagaatctcacacttggagacagcaaaacaagtttgggaaaagctagaagaaaagtttttt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3058883 |
taccatccttcactctgctgtgaatgatgatgttttcatgagaatctcacacttagagacagcaaaacaagtttgggaaaagctagaagaagagtttttt |
3058982 |
T |
|
| Q |
315 |
gggaatgaaagaaccaagcagatgcaggttctaaatctcaaaagagagtttgaagccttaaagatgaatgaggctgaaaacataaatgatttcatgacga |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3058983 |
gggaatgaaagaaccaagcagatgcaggttctaaatctcaaaagagagtttgaagccttaaagatgaatgaggctgaaaacataaatgatttcatgacga |
3059082 |
T |
|
| Q |
415 |
aagtgatgaaagttgtgaatcaaatcaggttgttgggagaacaatttcttgat |
467 |
Q |
| |
|
|||| |||||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
3059083 |
aagttatgaaagttgtgaatcaaattagattgttgggagaacaatttcttgat |
3059135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 15 - 467
Target Start/End: Original strand, 4873326 - 4873778
Alignment:
| Q |
15 |
aatattacccttccagcacctcctgtatttacaggaaagaaatatgaaatctggtctgtgaagatgaagactcatttgagggcatatgatctttgggaag |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4873326 |
aatattacccttccagcacctcctgtatttacaggaaagaaatatgaaatctggtctgtgaagatgaagactcatttgagggcatatgatctttgggaag |
4873425 |
T |
|
| Q |
115 |
tggtggaaacagctgctgaaccaccacctttgcaagaaaatccaactgttgctcaaatgaaataccacagtgagcaagttgccaagagagctaaggctct |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4873426 |
tggtggaaacagctgctgaaccaccacctttgcaagaaaatccaactgttgctcaaatgagataccacagtgagcaagttgccaagagagctaaggctct |
4873525 |
T |
|
| Q |
215 |
taccatccttcactctgctgtgaatgatgatgtttttatgagaatctcacacttggagacagcaaaacaagtttgggaaaagctagaagaaaagtttttt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4873526 |
taccatccttcactctgctgtgaatgatgatgttttcatgagaatctcacacttagagacagcaaaacaagtttgggaaaagctagaagaagagtttttt |
4873625 |
T |
|
| Q |
315 |
gggaatgaaagaaccaagcagatgcaggttctaaatctcaaaagagagtttgaagccttaaagatgaatgaggctgaaaacataaatgatttcatgacga |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4873626 |
gggaatgaaagaaccaagcagatgcaggttctaaatctcaaaagagagtttgaagccttaaagatgaatgaggctgaaaacataaatgatttcatgacga |
4873725 |
T |
|
| Q |
415 |
aagtgatgaaagttgtgaatcaaatcaggttgttgggagaacaatttcttgat |
467 |
Q |
| |
|
|||| |||||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
4873726 |
aagttatgaaagttgtgaatcaaataagattgttgggagaacaatttcttgat |
4873778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University