View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2651_low_14 (Length: 445)
Name: NF2651_low_14
Description: NF2651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2651_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 111; Significance: 7e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 283 - 429
Target Start/End: Original strand, 41833036 - 41833182
Alignment:
| Q |
283 |
ataattgacatatttcaataagatatataacgcacaaatatgttatgattaatttgtcaatcaaatgaatcacaccacttcacaatattagatttcttgc |
382 |
Q |
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| T |
41833036 |
ataattgacatatttcaatgagatatataacacacaaatattttataattaatttgtcaatcaaataaatcacaccacttcacaatattagatttcttgc |
41833135 |
T |
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| Q |
383 |
tatatacatttataagcaagcacatagattttattttttgtaatatt |
429 |
Q |
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| T |
41833136 |
gatatacatatataagcaagcatagagattttattttttgtaatatt |
41833182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 101 - 140
Target Start/End: Original strand, 41832890 - 41832929
Alignment:
| Q |
101 |
aagtcaaagaccttatttactgtttcatgcacccgcctgg |
140 |
Q |
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| T |
41832890 |
aagtcaaagaccttatttactgtttcatgcacccgcctgg |
41832929 |
T |
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