View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2651_low_15 (Length: 386)
Name: NF2651_low_15
Description: NF2651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2651_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 48 - 244
Target Start/End: Complemental strand, 27123097 - 27122900
Alignment:
| Q |
48 |
attatcaaatctccataaagtcatttttccatctcaattgtaattacaagaaacatactctagatttttacttaaggaatcagaaaaaataaataa-ggt |
146 |
Q |
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| T |
27123097 |
attatcaaatctccataaaatcattttgcaatctgaattataattaccagaaagatactctatatttttacttgaggaatcaggaaaaataaataaaggt |
27122998 |
T |
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| Q |
147 |
caaacttgaagagcaacgcaaagaaagtaaattatttatgccagaaatataaggaagacttatgccaaagattgcacaaacttaatacaaaggggaac |
244 |
Q |
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| T |
27122997 |
caaacttgaagagcaacacaaagaaagtaaattatttttgccagaaatataagaaagacttatgccaaagattgcacaaacttaatacaaagaggaac |
27122900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 298 - 368
Target Start/End: Complemental strand, 27122794 - 27122724
Alignment:
| Q |
298 |
ggattaattacatatgaatagaagacaaacggacaatatgttgcaccgttggatctttttggtgtatatat |
368 |
Q |
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| T |
27122794 |
ggattaattacatatgaaaagaagacaaacagacaatatgttgcacagttagatctttttggtgtatatat |
27122724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 333
Target Start/End: Original strand, 2601690 - 2601723
Alignment:
| Q |
300 |
attaattacatatgaatagaagacaaacggacaa |
333 |
Q |
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| T |
2601690 |
attaattacacatgaatagaagacaaacggacaa |
2601723 |
T |
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