View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2651_low_2 (Length: 1011)

Name: NF2651_low_2
Description: NF2651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2651_low_2
NF2651_low_2
[»] chr4 (4 HSPs)
chr4 (66-993)||(53556983-53557903)
chr4 (789-872)||(40253993-40254076)
chr4 (788-868)||(21174544-21174624)
chr4 (10-48)||(53556926-53556965)
[»] chr1 (5 HSPs)
chr1 (76-224)||(4685341-4685489)
chr1 (579-657)||(4685705-4685783)
chr1 (789-871)||(4686089-4686171)
chr1 (814-871)||(4609852-4609909)
chr1 (85-161)||(4612012-4612088)
[»] chr5 (3 HSPs)
chr5 (85-212)||(5113168-5113295)
chr5 (531-634)||(5113496-5113599)
chr5 (816-853)||(2591593-2591630)
[»] chr2 (1 HSPs)
chr2 (85-216)||(40820104-40820235)
[»] chr3 (4 HSPs)
chr3 (810-860)||(20740350-20740400)
chr3 (811-860)||(20732614-20732663)
chr3 (579-637)||(47846787-47846845)
chr3 (82-151)||(47847050-47847119)
[»] chr7 (3 HSPs)
chr7 (79-206)||(41208793-41208920)
chr7 (801-844)||(45675812-45675855)
chr7 (810-857)||(28944890-28944937)
[»] chr6 (1 HSPs)
chr6 (821-856)||(3616988-3617023)


Alignment Details
Target: chr4 (Bit Score: 837; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 837; E-Value: 0
Query Start/End: Original strand, 66 - 993
Target Start/End: Original strand, 53556983 - 53557903
Alignment:
Q  66 tcttaacaatacaaaaaagatgggtagagctccatgttgtgacaaggctaacgtgaagaaaggaccttggtctcctgaagaagatgctacactcaaatct 165  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53556983 tcttaataatacaaaaaagatgggtagagctccatgctgtgacaaggctaacgtgaagaaaggaccttggtctcctgaagaagatgctacactcaaatct 53557082  T
Q  166 tacattgaaacaaatggaactggaggaaattggattgctcttcctcaaaaaattggtaaatannnnnnnncttaatttttgtaattactagtacttctta 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||   |||||||||||||||    
T  53557083 tacattgaaacaaatggaactggaggaaattggattgctcttcctcaaaaaattggtaaatattttttttcttaatttttgt---tactagtacttctta 53557179  T
Q  266 gattatatatatgtatgtattgatcacaagggaattattattttctctttgtggtcgtagtacctcttgtacttttttcatctgggtttgaataaaatta 365  Q
    |||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  53557180 gattata----tgtatgtattgatcacaagggaattattattttctctttgtggtcgtagtacctcttgtacttttttcatctgagtttgaataaaatta 53557275  T
Q  366 tttgtttgctgatcaaacaagaaaattgtatactacgagaaaattatgtgaaatctatctctaattttgtagtatatggaaacttgaaactattttgatt 465  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53557276 tttgtttgctgatcaaacaagaaaattgtatactacgagaaaattatgtgaaatctatctctaattttgtagtatatggaaacttgaaactattttgatt 53557375  T
Q  466 ataatagtaatcttggattagtgcaaactaattaatgggataattacaaaaaattcacagggctcaagagatgtggaaagagttgcagacttaggtggtt 565  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53557376 ataatagtaatcttggtttagtgcaaactaattaatgggataattacaaaaaattcacagggctcaagagatgtggaaagagttgcagacttaggtggtt 53557475  T
Q  566 aaattacttgagacctaatatcaaacatggtggatttactgaagaagaagacaacatcatttgcagcctttacataagcattggaagcaggtccttgtct 665  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53557476 aaattacttgagacctaatatcaaacatggtggatttactgaagaagaagacaacatcatttgcagcctttacataagcattggaagcaggtccttgtct 53557575  T
Q  666 atcctcaaatttctccatctctacaacatactactgtttgtcttttttctttgtcactagaatctcaccatgttagaatcctttcttctcaactaattaa 765  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53557576 atcctcaaatttctccatctctacaacatactactgtttgtcttttttctttgtcactagaatctcaccatgttagaatcctttcttctcaactaattaa 53557675  T
Q  766 attaatttcatctatataactataggtggtccattattgctgctcagttacctggaagaacagacaatgacataaaaaactattggaacacaagattgaa 865  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53557676 attaattgtatctatataactataggtggtccattattgctgctcagttacctggaagaacagacaatgacataaaaaactattggaacacaagattgaa 53557775  T
Q  866 gaagaaattactcggaaagcgaaaacagtcaaatatcaacaacagcttgatgaaccaaaaggacacaaatggaatagatgagaattcttattcaaattca 965  Q
    |||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53557776 gaagaaattactcggaaagcgaaaacagtcgaatataaacaactgcttgatgaaccaaaaggacacaaatggaatagatgagaattcttattcaaattca 53557875  T
Q  966 ttaagtagctcagctcttgagagacttc 993  Q
    ||||||||||||||||||||||||||||    
T  53557876 ttaagtagctcagctcttgagagacttc 53557903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 789 - 872
Target Start/End: Complemental strand, 40254076 - 40253993
Alignment:
Q  789 aggtggtccattattgctgctcagttacctggaagaacagacaatgacataaaaaactattggaacacaagattgaagaagaaa 872  Q
    |||||||||||||| || || || ||||| ||| |||| || ||||| ||||| ||||||||||||||||  ||||||||||||    
T  40254076 aggtggtccattatagcagcgcaattaccaggacgaacggataatgatataaagaactattggaacacaaagttgaagaagaaa 40253993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 788 - 868
Target Start/End: Original strand, 21174544 - 21174624
Alignment:
Q  788 taggtggtccattattgctgctcagttacctggaagaacagacaatgacataaaaaactattggaacacaagattgaagaa 868  Q
    ||||||||| ||||| || ||||| ||||| || || ||||||||||| || || ||||||||||||||||  ||||||||    
T  21174544 taggtggtcaattatagcagctcaattaccaggtaggacagacaatgatatcaagaactattggaacacaaagttgaagaa 21174624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 48
Target Start/End: Original strand, 53556926 - 53556965
Alignment:
Q  10 catcatcatcatctcaaggagag-aattaaacctaatttc 48  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  53556926 catcatcatcatctcaaggagagaaattaaacctaatttc 53556965  T

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Target: chr1 (Bit Score: 69; Significance: 2e-30; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 76 - 224
Target Start/End: Original strand, 4685341 - 4685489
Alignment:
Q  76 acaaaaaagatgggtagagctccatgttgtgacaaggctaacgtgaagaaaggaccttggtctcctgaagaagatgctacactcaaatcttacattgaaa 175  Q
    |||| ||| |||||||||||||| ||||||||||| || |||||||||||||| || |||||||| ||||||||| ||| ||||||||||||||| |||     
T  4685341 acaacaaacatgggtagagctccttgttgtgacaaagcaaacgtgaagaaaggtccatggtctccagaagaagattctaaactcaaatcttacatagaac 4685440  T
Q  176 caaatggaactggaggaaattggattgctcttcctcaaaaaattggtaa 224  Q
     | |||| ||||| || || ||||||||||| || ||||||||||||||    
T  4685441 aacatggtactggtggtaactggattgctctcccacaaaaaattggtaa 4685489  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 579 - 657
Target Start/End: Original strand, 4685705 - 4685783
Alignment:
Q  579 cctaatatcaaacatggtggatttactgaagaagaagacaacatcatttgcagcctttacataagcattggaagcaggt 657  Q
    |||||| ||||||||||||| ||  | ||||||||||| ||||| ||||||||||||||||| || |||||||||||||    
T  4685705 cctaatctcaaacatggtggtttctccgaagaagaagataacattatttgcagcctttacattagtattggaagcaggt 4685783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 789 - 871
Target Start/End: Original strand, 4686089 - 4686171
Alignment:
Q  789 aggtggtccattattgctgctcagttacctggaagaacagacaatgacataaaaaactattggaacacaagattgaagaagaa 871  Q
    |||||||| || ||||| ||||| || || |||||||| || ||||||||||| ||||||||||| ||||| ||||| |||||    
T  4686089 aggtggtcgataattgcagctcaattgccaggaagaactgataatgacataaagaactattggaatacaaggttgaaaaagaa 4686171  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 814 - 871
Target Start/End: Complemental strand, 4609909 - 4609852
Alignment:
Q  814 tacctggaagaacagacaatgacataaaaaactattggaacacaagattgaagaagaa 871  Q
    ||||||| ||||||||||||||  | ||||||||||||||||||| | ||||||||||    
T  4609909 tacctggcagaacagacaatgatgtgaaaaactattggaacacaaaactgaagaagaa 4609852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 4612088 - 4612012
Alignment:
Q  85 atgggtagagctccatgttgtgacaaggctaacgtgaagaaaggaccttggtctcctgaagaagatgctacactcaa 161  Q
    ||||| |||||||| ||||||||||| |  || || |||| |||||| ||||||||||| |||||||| ||||||||    
T  4612088 atgggaagagctccttgttgtgacaaagaaaaagttaagagaggaccatggtctcctgatgaagatgcaacactcaa 4612012  T

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Target: chr5 (Bit Score: 52; Significance: 3e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 85 - 212
Target Start/End: Original strand, 5113168 - 5113295
Alignment:
Q  85 atgggtagagctccatgttgtgacaaggctaacgtgaagaaaggaccttggtctcctgaagaagatgctacactcaaatcttacattgaaacaaatggaa 184  Q
    ||||| |||||||| || |||||||| || || || || ||||| || ||||| |||||||||||||||| |||||| |||||||| |||  |||||| |    
T  5113168 atgggaagagctccttgctgtgacaaagccaatgtcaaaaaaggtccatggtcacctgaagaagatgctaaactcaagtcttacatagaacaaaatggta 5113267  T
Q  185 ctggaggaaattggattgctcttcctca 212  Q
    |||| ||||||||||||||||| |||||    
T  5113268 ctggtggaaattggattgctctacctca 5113295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 531 - 634
Target Start/End: Original strand, 5113496 - 5113599
Alignment:
Q  531 aagagatgtggaaagagttgcagacttaggtggttaaattacttgagacctaatatcaaacatggtggatttactgaagaagaagacaacatcatttgca 630  Q
    ||||||||||| || || ||  | ||||| |||||||||||  | ||||| ||||| ||||||||||| ||  | |||||||||||| |||| |||||||    
T  5113496 aagagatgtgggaaaagctgtcgtcttagatggttaaattatcttagaccaaatattaaacatggtggtttctccgaagaagaagacgacattatttgca 5113595  T
Q  631 gcct 634  Q
    ||||    
T  5113596 gcct 5113599  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 816 - 853
Target Start/End: Original strand, 2591593 - 2591630
Alignment:
Q  816 cctggaagaacagacaatgacataaaaaactattggaa 853  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  2591593 cctggtagaacagacaatgaaataaaaaactattggaa 2591630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 85 - 216
Target Start/End: Complemental strand, 40820235 - 40820104
Alignment:
Q  85 atgggtagagctccatgttgtgacaaggctaacgtgaagaaaggaccttggtctcctgaagaagatgctacactcaaatcttacattgaaacaaatggaa 184  Q
    ||||| |||||||| || |||||||| || || |||||||||||||| ||||| || ||||||||| | |  ||||||   || || ||||   ||||||    
T  40820235 atgggaagagctccttgctgtgacaaagcaaatgtgaagaaaggaccatggtcaccagaagaagatacaaagctcaaagagtatatagaaaagcatggaa 40820136  T
Q  185 ctggaggaaattggattgctcttcctcaaaaa 216  Q
    |||| |||||||||||| ||||||||||||||    
T  40820135 ctggtggaaattggatttctcttcctcaaaaa 40820104  T

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Target: chr3 (Bit Score: 39; Significance: 0.000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 810 - 860
Target Start/End: Complemental strand, 20740400 - 20740350
Alignment:
Q  810 cagttacctggaagaacagacaatgacataaaaaactattggaacacaaga 860  Q
    |||||||||||||||||||||||||| ||||| ||||| ||||||||||||    
T  20740400 cagttacctggaagaacagacaatgaaataaagaactactggaacacaaga 20740350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 811 - 860
Target Start/End: Complemental strand, 20732663 - 20732614
Alignment:
Q  811 agttacctggaagaacagacaatgacataaaaaactattggaacacaaga 860  Q
    ||||||||||||||||||||||||| ||||| ||||| ||||||||||||    
T  20732663 agttacctggaagaacagacaatgaaataaagaactactggaacacaaga 20732614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 579 - 637
Target Start/End: Complemental strand, 47846845 - 47846787
Alignment:
Q  579 cctaatatcaaacatggtggatttactgaagaagaagacaacatcatttgcagccttta 637  Q
    ||||| ||||| || ||||| || || ||||||||||||||||||||||||||||||||    
T  47846845 cctaacatcaagcacggtggtttcaccgaagaagaagacaacatcatttgcagccttta 47846787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 151
Target Start/End: Complemental strand, 47847119 - 47847050
Alignment:
Q  82 aagatgggtagagctccatgttgtgacaaggctaacgtgaagaaaggaccttggtctcctgaagaagatg 151  Q
    |||||||| || || || || |||||||| || ||||||||||||||||||||||| || ||||||||||    
T  47847119 aagatgggaagggcaccttgctgtgacaaagcaaacgtgaagaaaggaccttggtcaccagaagaagatg 47847050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 206
Target Start/End: Complemental strand, 41208920 - 41208793
Alignment:
Q  79 aaaaagatgggtagagctccatgttgtgacaaggctaacgtgaagaaaggaccttggtctcctgaagaagatgctacactcaaatcttacattgaaacaa 178  Q
    ||||| ||||| ||| |||| || |||||||| ||||| || |||||||| || |||||||||||||||||||| | ||| ||    ||||| || | |     
T  41208920 aaaaaaatgggaagatctccttgctgtgacaaagctaatgtaaagaaaggtccatggtctcctgaagaagatgcaaaactaaaggaatacatagagaaac 41208821  T
Q  179 atggaactggaggaaattggattgctct 206  Q
    |||||||||||||||| |||||| ||||    
T  41208820 atggaactggaggaaactggattactct 41208793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 801 - 844
Target Start/End: Complemental strand, 45675855 - 45675812
Alignment:
Q  801 attgctgctcagttacctggaagaacagacaatgacataaaaaa 844  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||    
T  45675855 attgcagctcagttacctggaagaacagacaatgagataaaaaa 45675812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 810 - 857
Target Start/End: Complemental strand, 28944937 - 28944890
Alignment:
Q  810 cagttacctggaagaacagacaatgacataaaaaactattggaacaca 857  Q
    |||||||| ||||||||||||||||| ||||| |||| ||||||||||    
T  28944937 cagttacccggaagaacagacaatgagataaagaacttttggaacaca 28944890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 821 - 856
Target Start/End: Original strand, 3616988 - 3617023
Alignment:
Q  821 aagaacagacaatgacataaaaaactattggaacac 856  Q
    ||||||||||||||||||||||||||||||||||||    
T  3616988 aagaacagacaatgacataaaaaactattggaacac 3617023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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