View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2651_low_21 (Length: 318)
Name: NF2651_low_21
Description: NF2651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2651_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 300
Target Start/End: Complemental strand, 832604 - 832317
Alignment:
| Q |
17 |
atatagaaaatatcattatctaagttacaataagcataaataacaagacaatggtcaataaataattactcaacaattaataccgagaagctaattaagc |
116 |
Q |
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| T |
832604 |
atatagaaaatatcatcatctaagttacaataagcataaataacaagaaaatggtcaataaataataactcaacaattaataccgacaagctaattaagc |
832505 |
T |
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| Q |
117 |
agcaaagcaatcacacaatctattattataacaacataaacgaagta--------acatagattcaaacaagtaaaatgtggaagagaaactcactcact |
208 |
Q |
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| T |
832504 |
agcaaagcaatcacacaatctattattataacaacaaaaacgaagtaattaacatacatagattcaaacaagaaaaatgtggaagagaaactcactcact |
832405 |
T |
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| Q |
209 |
tttaataaggctgcaccaaactttcaacgtaatactgggcctcataccacatcatacccttacttaattcctccaattctcactactctatc |
300 |
Q |
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| T |
832404 |
tttaataaagctgcaccaaactttcaacgtaatactgggcctcggaccacatcatacccttac----ttcctccaattctcactactctatc |
832317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 10464640 - 10464584
Alignment:
| Q |
148 |
caacataaacgaagtaacatagattcaaacaagtaaaatgtggaagagaaactcact |
204 |
Q |
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| T |
10464640 |
caacataaatgaagtaatataaattctaacaagtaatatgtggaagagaaactcact |
10464584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 204
Target Start/End: Complemental strand, 10482528 - 10482487
Alignment:
| Q |
163 |
aacatagattcaaacaagtaaaatgtggaagagaaactcact |
204 |
Q |
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| T |
10482528 |
aacataaattcaaacaagtaatatgtggaagagaaactcact |
10482487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 10475575 - 10475519
Alignment:
| Q |
148 |
caacataaacgaagtaacatagattcaaacaagtaaaatgtggaagagaaactcact |
204 |
Q |
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||||||| | ||| ||| ||| |||||||||||||| |||||||||||||||||||| |
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| T |
10475575 |
caacatacatgaaataatataaattcaaacaagtaatatgtggaagagaaactcact |
10475519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 148 - 203
Target Start/End: Original strand, 8443169 - 8443223
Alignment:
| Q |
148 |
caacataaacgaagtaacatagattcaaacaagtaaaatgtggaagagaaactcac |
203 |
Q |
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| T |
8443169 |
caacatacacgaagtaacaaaaattcaaacaagt-aaatgtggaatagaaactcac |
8443223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 204
Target Start/End: Complemental strand, 10468382 - 10468348
Alignment:
| Q |
170 |
attcaaacaagtaaaatgtggaagagaaactcact |
204 |
Q |
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| T |
10468382 |
attcaaacaagtaatatgtggaagagaaactcact |
10468348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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