View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2651_low_25 (Length: 229)
Name: NF2651_low_25
Description: NF2651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2651_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 120 - 213
Target Start/End: Complemental strand, 9442616 - 9442523
Alignment:
| Q |
120 |
aaagggtatgatgtaaagtttaagattttgactttgattctgattagactcagaagcatattatacgttttaatttatgcagtaacattaaaaa |
213 |
Q |
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| T |
9442616 |
aaagggtatgatgtaaagtttaagattttgactttgattctgattagactcagaagcatattatacgttttaatttatgcagtaacattaaaaa |
9442523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 29 - 122
Target Start/End: Complemental strand, 9442751 - 9442658
Alignment:
| Q |
29 |
ataatactgcctcgatatttcaacattaaggaaactatgacaggtacaaaggagaccacatcaatataaaacattcagttttgtgctttgaaaa |
122 |
Q |
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| T |
9442751 |
ataatactgcctcgatatttcaacattaaggaaactatgacaggtacaaaggagaccacatcaatataaaacattcagttttgtgctttgaaaa |
9442658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 29 - 213
Target Start/End: Original strand, 9415782 - 9415986
Alignment:
| Q |
29 |
ataatactgcctcgatatttcaacattaaggaaactatgacaggtacaaaggagaccacatcaatataaaacattcagttttgtgctttgaa-------- |
120 |
Q |
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| T |
9415782 |
ataatactgccccggtatttcaacattaaggaaactttgacaggaacaaaggagaccacatcaacataaa-cattcagttttgtgctttgaacccggaaa |
9415880 |
T |
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| Q |
121 |
-----------aagggtatgatgtaaagtttaagattttgactttgattctgatta--gactcagaagcatattatacgttttaatttatgcagtaacat |
207 |
Q |
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| T |
9415881 |
tagtcctagtaaagggtatgatgtaaagtttatgattttgtctttgattctgattacggactcagaagcatattatgcgttttagtttatgcagtaacat |
9415980 |
T |
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| Q |
208 |
taaaaa |
213 |
Q |
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|||||| |
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| T |
9415981 |
taaaaa |
9415986 |
T |
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