View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2651_low_26 (Length: 228)
Name: NF2651_low_26
Description: NF2651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2651_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 30 - 139
Target Start/End: Original strand, 41784366 - 41784475
Alignment:
| Q |
30 |
ttcattatttataaattatagaagagcatgaactttatacactataaatatcaaatcatattctattttatacaagcaaagtgaaaacaaatatggctga |
129 |
Q |
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|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
41784366 |
ttcattatttataatttatagaaaagcatgaactttatacactataaatatcaaatcatattctattttatacaaacaaagtgaaaacaaatatggctga |
41784465 |
T |
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| Q |
130 |
aattctcaag |
139 |
Q |
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|||||||||| |
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| T |
41784466 |
aattctcaag |
41784475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 26 - 139
Target Start/End: Original strand, 41779708 - 41779821
Alignment:
| Q |
26 |
caatttcattatttataaattatagaagagcatgaactttatacactataaatatcaaatcatattctattttatacaagcaaagtgaaaacaaatatgg |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
41779708 |
caatttcattatttataaattatagaagagcatgaactttatacacagtaaatattaaatcatattctattttatacaagcaaagtggaaacaaatatgg |
41779807 |
T |
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| Q |
126 |
ctgaaattctcaag |
139 |
Q |
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||||||||||||| |
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| T |
41779808 |
ttgaaattctcaag |
41779821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 31 - 139
Target Start/End: Original strand, 41791122 - 41791235
Alignment:
| Q |
31 |
tcattatttataaatta-----tagaagagcatgaactttatacactataaatatcaaatcatattctattttatacaagcaaagtgaaaacaaatatgg |
125 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
41791122 |
tcattatttataaattactccatagaagagcatgaactttatacactataaatatcaaatcatattctattttatacaagcaaattagaaacaaatatgg |
41791221 |
T |
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| Q |
126 |
ctgaaattctcaag |
139 |
Q |
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| T |
41791222 |
ccgaaattctcaag |
41791235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 45 - 138
Target Start/End: Complemental strand, 1681721 - 1681623
Alignment:
| Q |
45 |
ttatagaagagcatgaactttatacactataaatatcaaatcatattctattttatacaagcaaagt-----gaaaacaaatatggctgaaattctcaa |
138 |
Q |
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||||| || ||||| ||||||||||||||||||||||||| ||||||||| |||||||| ||||||| ||||| |||||||| |||||||||||| |
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| T |
1681721 |
ttataaaacagcataaactttatacactataaatatcaaaccatattctactttatacatgcaaagtagaaagaaaaaaaatatggttgaaattctcaa |
1681623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 1811878 - 1811830
Alignment:
| Q |
52 |
agagcatgaactttatacactataa--atatcaaatcatattctatttt |
98 |
Q |
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||||||| ||||||||||||||||| ||||||||| |||||||||||| |
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| T |
1811878 |
agagcataaactttatacactataaatatatcaaattatattctatttt |
1811830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 90
Target Start/End: Complemental strand, 1882037 - 1881998
Alignment:
| Q |
53 |
gagcatgaactttatacactataaat--atcaaatcatat |
90 |
Q |
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|||||||||||||||||||||||||| |||||||||||| |
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|
| T |
1882037 |
gagcatgaactttatacactataaattgatcaaatcatat |
1881998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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