View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2651_low_27 (Length: 216)

Name: NF2651_low_27
Description: NF2651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2651_low_27
NF2651_low_27
[»] chr6 (11 HSPs)
chr6 (132-199)||(27587796-27587863)
chr6 (82-129)||(27587905-27587952)
chr6 (135-199)||(25487985-25488049)
chr6 (135-199)||(26061233-26061297)
chr6 (135-199)||(26081203-26081267)
chr6 (82-129)||(25487868-25487915)
chr6 (82-129)||(27312877-27312924)
chr6 (146-199)||(27659669-27659722)
chr6 (82-130)||(26634381-26634429)
chr6 (82-130)||(26740357-26740405)
chr6 (145-197)||(27599637-27599689)
[»] chr2 (1 HSPs)
chr2 (82-129)||(17989397-17989444)


Alignment Details
Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 132 - 199
Target Start/End: Complemental strand, 27587863 - 27587796
Alignment:
Q  132 gtgctctggtatggatatggtgagacctgatgtaaggttttgtggaggatgtttctgctgcagatatt 199  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27587863 gtgctctggtattgatatagtgagacctgatgtaaggttttgtggaggatgtttgtgctgcagatatt 27587796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 27587952 - 27587905
Alignment:
Q  82 atgtgggataaagaactgaatctgagaaccgacatttatcagatcctt 129  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  27587952 atgtgggataaagaactgaatctgacaaccgacatttataagatcctt 27587905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 25487985 - 25488049
Alignment:
Q  135 ctctggtatggatatggtgagacctgatgtaaggttttgtggaggatgtttctgctgcagatatt 199  Q
    ||||||| | ||||||||||||||||||||||  |||| |||||||||||| ||||||| |||||    
T  25487985 ctctggttttgatatggtgagacctgatgtaattttttatggaggatgtttgtgctgcaaatatt 25488049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 26061233 - 26061297
Alignment:
Q  135 ctctggtatggatatggtgagacctgatgtaaggttttgtggaggatgtttctgctgcagatatt 199  Q
    ||||||| | ||||||||||||||||||||||  |||| |||||||||||| ||||||| |||||    
T  26061233 ctctggttttgatatggtgagacctgatgtaattttttatggaggatgtttgtgctgcatatatt 26061297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 26081203 - 26081267
Alignment:
Q  135 ctctggtatggatatggtgagacctgatgtaaggttttgtggaggatgtttctgctgcagatatt 199  Q
    ||||||| | ||||||||||||||||||||||  |||| |||||||||||| ||||||| |||||    
T  26081203 ctctggttttgatatggtgagacctgatgtaattttttatggaggatgtttgtgctgcatatatt 26081267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 25487868 - 25487915
Alignment:
Q  82 atgtgggataaagaactgaatctgagaaccgacatttatcagatcctt 129  Q
    ||||||||||||||| | |||||||||||||||||| || ||||||||    
T  25487868 atgtgggataaagaaataaatctgagaaccgacattcatgagatcctt 25487915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 27312924 - 27312877
Alignment:
Q  82 atgtgggataaagaactgaatctgagaaccgacatttatcagatcctt 129  Q
    ||||| ||||||||||| ||||| ||||||||||||||| ||||||||    
T  27312924 atgtgtgataaagaactaaatctaagaaccgacatttatgagatcctt 27312877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 146 - 199
Target Start/End: Complemental strand, 27659722 - 27659669
Alignment:
Q  146 atatggtgagacctgatgtaaggttttgtggaggatgtttctgctgcagatatt 199  Q
    |||||||||||| ||||||||| ||||  ||||||||||| |||| ||||||||    
T  27659722 atatggtgagacatgatgtaagtttttaaggaggatgtttgtgctacagatatt 27659669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 26634381 - 26634429
Alignment:
Q  82 atgtgggataaagaactgaatctgagaaccgacatttatcagatccttc 130  Q
    ||||| ||||||||||| ||||| ||||||||||||||| | |||||||    
T  26634381 atgtgtgataaagaactaaatctaagaaccgacatttatgaaatccttc 26634429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 26740357 - 26740405
Alignment:
Q  82 atgtgggataaagaactgaatctgagaaccgacatttatcagatccttc 130  Q
    ||||| ||||||||||| ||||| ||||||||||||||| | |||||||    
T  26740357 atgtgtgataaagaactaaatctaagaaccgacatttatgaaatccttc 26740405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 27599689 - 27599637
Alignment:
Q  145 gatatggtgagacctgatgtaaggttttgtggaggatgtttctgctgcagata 197  Q
    |||||||||| |||||||||||| ||||  |||||||| || |||||||||||    
T  27599689 gatatggtgatacctgatgtaagtttttagggaggatgcttgtgctgcagata 27599637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 17989444 - 17989397
Alignment:
Q  82 atgtgggataaagaactgaatctgagaaccgacatttatcagatcctt 129  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||    
T  17989444 atgtgggataaagaactgaatctgagaaccaacatttatccgatcctt 17989397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University