View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2651_low_4 (Length: 836)

Name: NF2651_low_4
Description: NF2651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2651_low_4
NF2651_low_4
[»] chr5 (8 HSPs)
chr5 (15-372)||(27561473-27561830)
chr5 (19-531)||(36668348-36668870)
chr5 (560-792)||(27561954-27562186)
chr5 (562-791)||(36669011-36669239)
chr5 (258-340)||(31707837-31707919)
chr5 (134-390)||(36672630-36672887)
chr5 (152-364)||(27563307-27563519)
chr5 (391-531)||(27563153-27563291)
[»] chr1 (2 HSPs)
chr1 (15-539)||(29410876-29411410)
chr1 (567-792)||(29411503-29411725)
[»] chr3 (1 HSPs)
chr3 (16-332)||(24202401-24202719)
[»] chr8 (1 HSPs)
chr8 (677-759)||(26928621-26928703)


Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 15 - 372
Target Start/End: Original strand, 27561473 - 27561830
Alignment:
Q  15 cacagactcaaattatttagataaatttctgtacaagaccaatcacaaagtaggtgagaaagaaaatgaaagggcagtttgtgtgaataaccttcccatt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |    
T  27561473 cacagactcaaattatttagataaatttctgtacaagaccaatcacaaagtaggtgagaaagaaaatgaaagggaagtttgtgtgaataaccttcccact 27561572  T
Q  115 caatttcgctgaatgaatgtgctttctcacgcaatgctacagctttaagagctgcatctttccatcgcttcaactgtgtttccatcatccccatttcttt 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  27561573 caatttcgctgaatgaatgtgctttctcacgcaatgctacagctttaagagctgcatctttcgatcgcttcaactgtgtttccatcatccccatttcttt 27561672  T
Q  215 agataaagctgaagatatcacacgaaactcagctttgatatcatttctccctgaaacgtttaatattgtaagaaatgaggagatccaaacatacacactg 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  27561673 agataaagctgaagatatcacacgaaactcagctttgatatcatttctccctaaaacgtttaatattgtaagaaatgaggagatccaaacgtacacactg 27561772  T
Q  315 caaatctaaatagagaaaaggtgatatacagaccagtatcctctttggcctcttccac 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27561773 caaatctaaatagagaaaaggtgatatacagaccagtatcctctttggcctcttccac 27561830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 531
Target Start/End: Original strand, 36668348 - 36668870
Alignment:
Q  19 gactcaaattatttagataaatttctgtacaagaccaatcacaaagtaggtgagaaagaaaatgaaagggcagtttgtgtgaataaccttcccattcaat 118  Q
    |||||||||||| ||||||| |||||||| |||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  36668348 gactcaaattatctagataactttctgtaaaagacctatcacaaagaaggtgagaaagaaaatgaaatggcagtttgtgtgaataaccttcccactcaat 36668447  T
Q  119 ttcgctg--aatgaatgtgctttctcacgcaatgctacagctttaagagctgcatctttccatcgcttcaactgtgtttccatcatccccatttctttag 216  Q
    ||| ||   |  |||||||||||| ||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36668448 ttctctcttagcgaatgtgctttcgcacgcaatgatacagcttcatgagctgcatctttccatcgcttcaactgtgtttccatcatccccatttctttag 36668547  T
Q  217 ataaagctgaagatatcacacgaaactcagctttgatatcatttctccctgaaacgtttaatattgtaagaaatgaggagatccaaacatacacactgca 316  Q
    |||| |||||||| ||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  36668548 ataaggctgaagacatcacaccaaactcagctttgatatcttttctccctgaaacatttaatattgtaagaaatgaggagatccaaacatacacactgca 36668647  T
Q  317 aatctaaatagagaaaaggtgatatacagaccagtatcctctttggcctcttccaccttgatttcaacatcat--------ttaatacacttttgcaact 408  Q
    ||||||||||  |||||  ||||| |||||||| |||| | |||||||||||||| ||||||||||| |||||        |||||||||||||||||||    
T  36668648 aatctaaataatgaaaatatgatacacagaccaatatcttgtttggcctcttccatcttgatttcaagatcattcctttcattaatacacttttgcaact 36668747  T
Q  409 gaatcttgagctcatcagtcatagagtcagaattgtcatggatatgctttgcattaacagcacactctaatttcaaattgaattccttctcccgctttgc 508  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||| ||| |||| |||||  |||| |||||||||||||| |||||    
T  36668748 gaatcttgagctcatcagtcctagagtcagaaatgtcatggatatgccttgcattaaccgcagactccaatttagaattcaattccttctcccgttttgc 36668847  T
Q  509 gtagttaatcctgccagcctaaa 531  Q
       |||| |||||| ||||||||    
T  36668848 aatgttagtcctgctagcctaaa 36668870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 560 - 792
Target Start/End: Original strand, 27561954 - 27562186
Alignment:
Q  560 cactgttaatgatttatatctatccaattcagcgatccaatgtggaagttgatcatttgccatagagtatactcgggaagtgtgtacatattatcatcat 659  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27561954 cactgttaatgatttatatctatccaattcagcgatccaatgttgaagttgatcattttccatagagtatactcgggaagtgtgtacatattatcatcat 27562053  T
Q  660 ttagttcattctggaaataaacatacatgaaaagatacttttacatggaaccctagagtaaatgcatctcatttactcaagaaataatgacaaaatcatt 759  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27562054 ttagttcattctggaaataaacatacatgaaaagatacttttacatggaaccctagagtaaatgcatctcatttactcaagaaataatgacaaaatcatt 27562153  T
Q  760 gcagatagctcaaatttacaaacctgaagttct 792  Q
    |||||||||||||||||||||||||||||||||    
T  27562154 gcagatagctcaaatttacaaacctgaagttct 27562186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 155; E-Value: 8e-82
Query Start/End: Original strand, 562 - 791
Target Start/End: Original strand, 36669011 - 36669239
Alignment:
Q  562 ctgttaatgatttatatctatccaattcagcgatccaatgtggaagttgatcatttgccatagagtatactcgggaagtgtgtacata-ttatcatcatt 660  Q
    |||| ||||||||| |||||||||||||||| ||||||||| |||||||||| ||||||| ||||||||||||||||||| ||||||| |||||||||||    
T  36669011 ctgtcaatgatttaaatctatccaattcagcaatccaatgttgaagttgatcctttgccaaagagtatactcgggaagtgcgtacatacttatcatcatt 36669110  T
Q  661 tagttcattctggaaataaacatacatgaaaagatacttttacatggaaccctagagtaaatgcatctcatttactcaagaaataatgacaaaatcattg 760  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||| ||||||||||| ||||| ||||||||||||||||| |||||    
T  36669111 tagttcattctgg-aataaacatacatgaaaagatacttttagatggaaccct-gagtcaatgcatctcaattactgaagaaataatgacaaaaccattg 36669208  T
Q  761 cagatagctcaaatttacaaacctgaagttc 791  Q
    ||||||| |||||||||||||||||||||||    
T  36669209 cagatagttcaaatttacaaacctgaagttc 36669239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 258 - 340
Target Start/End: Original strand, 31707837 - 31707919
Alignment:
Q  258 tttctccctgaaacgtttaatattgtaagaaatgaggagatccaaacatacacactgcaaatctaaatagagaaaaggtgata 340  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  31707837 tttctccttgaaacatttaatattgtaagaaatgaggagatccaaacatacacactacaaatctaaatagagaaaatgtgata 31707919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 134 - 390
Target Start/End: Complemental strand, 36672887 - 36672630
Alignment:
Q  134 tgctttctcacgcaatgctacagctttaagagctgcatctttccatcgcttcaactgtgtttccatcatccccatttcttt-agataaagctgaagat-a 231  Q
    ||||||||||| ||||| |||| ||| ||||||| |||||||||||| |||||||||   |||  ||||||| |||| ||| |||||||||| | ||| |    
T  36672887 tgctttctcacacaatgatacaacttcaagagctacatctttccatcacttcaactgatcttctgtcatcccaattttttttagataaagct-atgatca 36672789  T
Q  232 tcacacgaaactcagctttgatatcatttctccctgaaacgtttaatattgtaagaaatgaggagatccaaacatacacactgcaaatctaaatagagaa 331  Q
    ||||||| |||||| |||||||| |  |||||| | |||| |  |||| |||||||||  ||||||| |||||||| ||||| || ||||||||||| ||    
T  36672788 tcacacgtaactcaactttgatacctattctcctttaaacatgcaatactgtaagaaactaggagattcaaacatagacacttcatatctaaatagataa 36672689  T
Q  332 aaggtgatatacagaccagtatcctctttggcctcttccaccttgatttcaacatcatt 390  Q
    || ||||||| ||||||| |||| | |||||||| ||||| ||| ||||| | ||||||    
T  36672688 aatgtgatatgcagaccaatatcttgtttggccttttccatcttaatttccatatcatt 36672630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 152 - 364
Target Start/End: Complemental strand, 27563519 - 27563307
Alignment:
Q  152 tacagctttaagagctgcatctttccatcgcttcaactgtgtttccatcatcccc-atttctttagataaagctgaagat-atcacacgaaactcagctt 249  Q
    |||| ||| |||||||||||| ||| ||| |||||||||   ||||||||||||| |||| ||||||||||||| ||||| |||||||  ||||||  ||    
T  27563519 tacaacttcaagagctgcatccttctatcacttcaactgctcttccatcatccccgatttttttagataaagct-aagatcatcacacataactcaagtt 27563421  T
Q  250 tgatatcatttctccctgaaacgtttaatattgtaagaaatgaggagatccaaacatacacactgcaaatctaaatagagaaaaggtgatatacagacca 349  Q
     |||||| | |||||||||||| |  ||||| ||||||||  || |||| ||||||||||||||  | ||||||||| | |||| ||||||| ||||| |    
T  27563420 -gatatcttctctccctgaaacatgcaatatggtaagaaactagaagattcaaacatacacactagacatctaaatacaaaaaatgtgatatgcagacta 27563322  T
Q  350 gtatcctctttggcc 364  Q
    | ||| | |||||||    
T  27563321 gcatcttgtttggcc 27563307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 391 - 531
Target Start/End: Complemental strand, 27563291 - 27563153
Alignment:
Q  391 taatacacttttgcaactgaatcttgagctcatcagtcatagagtcagaattgtcatggatatgctttgcattaacagcacactctaatttcaaattgaa 490  Q
    ||||||| || |||||||||| || |||  |||| |||||||  |||||||||||| ||||| || |||||||| ||||| |||| ||||||||||| |     
T  27563291 taatacatttctgcaactgaagctcgaggccatcggtcatag--tcagaattgtcaaggatacgccttgcattatcagcagactccaatttcaaattcag 27563194  T
Q  491 ttccttctcccgctttgcgtagttaatcctgccagcctaaa 531  Q
    |||||||||||  |||| |  ||||  ||||||||||||||    
T  27563193 ttccttctcccattttgagatgttagccctgccagcctaaa 27563153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 15 - 539
Target Start/End: Original strand, 29410876 - 29411410
Alignment:
Q  15 cacagactcaaattatttagataaatttctgtacaagaccaatcacaaagtaggtgagaaagaaaatgaaagggcagtttgtgtgaataaccttcccatt 114  Q
    |||| |||||||||||  |||| |||||||||| |||||  ||||||||||||| ||||||||||||||||||| | ||| || |||||||||| ||| |    
T  29410876 cacaaactcaaattatcaagatgaatttctgtaaaagacttatcacaaagtaggcgagaaagaaaatgaaagggtactttatgcgaataacctttccact 29410975  T
Q  115 caattt--cgctgaatgaatgtgctttctcacgcaatgctacagctttaagagctgcatctttccatcgcttcaactgtgtttccatcatccccatttct 212  Q
    ||||||  | || | |||||| ||||||||||| |||| |||||||| |||||||||||||||||||||||||| ||| |  ||||||||||||||||||    
T  29410976 caatttttctcttagtgaatgcgctttctcacgtaatgatacagcttcaagagctgcatctttccatcgcttcacctgcgcgtccatcatccccatttct 29411075  T
Q  213 ttagataaagctgaagatatcacacgaaactcagctttgatatcatttctccctgaaacgtttaatattgtaagaaatgaggagatccaaacatacacac 312  Q
    ||||||||||||||||  |||||||||||||| |||||||| || |||||||||||||  ||||| | ||||||||| |||| ||||||||||||||||     
T  29411076 ttagataaagctgaagccatcacacgaaactcggctttgatgtcttttctccctgaaaaatttaacagtgtaagaaacgaggggatccaaacatacacag 29411175  T
Q  313 tgcaaatctaaatagagaaaaggtgatatacagaccagtatcctctttggcctcttccaccttgatttcaacatcatt--------taatacacttttgc 404  Q
    ||||||| ||||||||||||| ||| ||  |||||||||||||| |||||||||||||| | | ||||||| ||||||        |||||||||| |||    
T  29411176 tgcaaatataaatagagaaaatgtgctacgcagaccagtatcctgtttggcctcttccatcgtaatttcaagatcattcttttcaataatacacttctgc 29411275  T
Q  405 aactgaatcttgagctcatcagtcatagagtcagaattgtcatggatatgctttgcattaacagcacactctaatttcaaattgaattccttctcccgct 504  Q
    || |||| ||||||||||||| || |||||||||||||||||||||||||| |||||||||||||| |||| |||||||| || || ||||||||||| |    
T  29411276 aattgaagcttgagctcatcaatcctagagtcagaattgtcatggatatgccttgcattaacagcagactccaatttcaacttcaactccttctcccgtt 29411375  T
Q  505 ttgcgtagttaatcctgccagcctaaagttgcatt 539  Q
    ||| |  ||||| |||||||||||||| |||||||    
T  29411376 ttgagacgttaaccctgccagcctaaaattgcatt 29411410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 567 - 792
Target Start/End: Original strand, 29411503 - 29411725
Alignment:
Q  567 aatgatttatatctatccaattcagcgatccaatgtggaagttgatcatttgccatagagtatactcgggaagtgtgtacata-ttatcatcatttagtt 665  Q
    |||||||||||||| ||||||||||| ||||| ||| |||||||||||||||||| |||||||||||||||| || ||||||| ||||||||||||||||    
T  29411503 aatgatttatatctgtccaattcagcaatccagtgttgaagttgatcatttgccaaagagtatactcgggaattgcgtacatacttatcatcatttagtt 29411602  T
Q  666 cattctggaaataaacatacatgaaaagatacttttacatggaaccctagagtaaatgcatctcatttactcaagaaataatgacaaaatcattgcagat 765  Q
    |||||||||||||||||     ||||||||||||||||||||||||||| | | ||||  | ||| |||||||||||||||||| || | ||||||||||    
T  29411603 cattctggaaataaacac----gaaaagatacttttacatggaaccctataatgaatgtgtttcaattactcaagaaataatgataacaccattgcagat 29411698  T
Q  766 agctcaaatttacaaacctgaagttct 792  Q
    |||||||||| ||||||||||||||||    
T  29411699 agctcaaattgacaaacctgaagttct 29411725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 172; Significance: 5e-92; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 16 - 332
Target Start/End: Complemental strand, 24202719 - 24202401
Alignment:
Q  16 acagactcaaattatttagataaatttctgtacaagaccaatcacaaagtaggtgagaaagaaaatgaaagggcagtttgtgtgaataaccttcccattc 115  Q
    ||||||||||||||| |||||||||| ||||| |||||| |||||||||| ||||| |||||||||||||||| | ||||||||||||||||||||| ||    
T  24202719 acagactcaaattatctagataaattgctgtaaaagacctatcacaaagtcggtgacaaagaaaatgaaagggaactttgtgtgaataaccttcccactc 24202620  T
Q  116 aatttcgctg--aatgaatgtgctttctcacgcaatgctacagctttaagagctgcatctttccatcgcttcaactgtgtttccatcatccccatttctt 213  Q
    |||||||||   | ||||||||||||||||||||| | ||| |||| ||| ||||||||||  ||||||||||||||||  |||||||| ||||||||||    
T  24202619 aatttcgctcttagtgaatgtgctttctcacgcaaggatacggcttcaagtgctgcatcttctcatcgcttcaactgtgcatccatcattcccatttctt 24202520  T
Q  214 tagataaagctgaagatatcacacgaaactcagctttgatatcatttctccctgaaacgtttaatattgtaagaaatgaggagatccaaacatacacact 313  Q
    ||||||||| |||||  || |||||||||||| |||||||||| ||| |||||||||| ||||||||||||||||   |||||||| |||||||| ||||    
T  24202519 tagataaagttgaagccataacacgaaactcaactttgatatcttttgtccctgaaacatttaatattgtaagaaccaaggagatctaaacatactcact 24202420  T
Q  314 gcaaatctaaatagagaaa 332  Q
    |||||||||||||||||||    
T  24202419 gcaaatctaaatagagaaa 24202401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 4e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 677 - 759
Target Start/End: Original strand, 26928621 - 26928703
Alignment:
Q  677 taaacatacatgaaaagatacttttacatggaaccctagagtaaatgcatctcatttactcaagaaataatgacaaaatcatt 759  Q
    |||||| |||| |||| |||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||| ||||    
T  26928621 taaacacacataaaaatatacttttacatggaaccctagagtatatgcatctaaattactcaagaaataatgacaaaaccatt 26928703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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