View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2651_low_5 (Length: 831)
Name: NF2651_low_5
Description: NF2651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2651_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 628; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 628; E-Value: 0
Query Start/End: Original strand, 119 - 812
Target Start/End: Complemental strand, 43716544 - 43715857
Alignment:
| Q |
119 |
ttcatctcaacttatcttcttcgccttacaaaagttcattacttttcaacttctttttatatgttaataacatagaaa-gctagagatgaatcagtgtct |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
43716544 |
ttcatctcaacttatcttcttcgccttacaaaagttcattacttttcaacttctttttatatgttaataacatagaaaagctagagatgaatcagtgtct |
43716445 |
T |
|
| Q |
218 |
cccagtaaacctgaagataagtctttattcaaaaacatggaatatctttcaaatattttcctggttgctctgacatctaagttaatataagtctttatat |
317 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43716444 |
cccagtaaacctgaagataagtct--attcaaaaacatggaatatctttcaaatattttcctggttgctctgacatctaagttaatataagtctttatat |
43716347 |
T |
|
| Q |
318 |
attttctacatgtttactcgattagtttattctgcagatattctggtttctttggacaattattatatttcaaagggtatcaacagagtttgtggaatat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43716346 |
attttctacatgtttactcgattagtttattctgcagatattctggtttctttggacaattattatatttcaaagggtatcaacagagtttgtggaatat |
43716247 |
T |
|
| Q |
418 |
gatttcctctgtatgtgatgtgatctttgaataattatcattaattgagccaccacctgcaggagtgggatctggtgattgtaaatgattgttaacttgt |
517 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43716246 |
gatttcctctgtatgtgat-----ctttgaattattatcattaattgagccaccacctgcaggagtgggatctggtgattgtaaatgattgttaatttgt |
43716152 |
T |
|
| Q |
518 |
tattattttttctagcttcttcttcttgttgtctctgattacggcagataaaaatatggaggaggaggacagtgatatcgagccagctccaaagctgatt |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
43716151 |
tattattttttctagcttcttcttcttgttgtctctgactatggcagataaaaatatggaggaggaggacagtgatattgagccagctccaaagctgatt |
43716052 |
T |
|
| Q |
618 |
gaaattgtcttcctaaactgcagaggactggtggaccactgggttgagccatatctcagaattacaattgaaagtttgcatagaactggaaaaatcatat |
717 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43716051 |
gaaattgtcttcctaaactgcagaggactggtggaccactgggttgagccatatctcagaattacaattgaaagtttgcatagaactggaaaaatcatat |
43715952 |
T |
|
| Q |
718 |
ttgaaatgtcttctcattcaagtggtaaggttttaatataatctttattgacatgcacaaatgagatagttggttctgttgctttatttcttatt |
812 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43715951 |
ttgaaatgtcttctcattcaattggtaaggttttaatagaatctttattgacatgcacaaatgagatagttggttctgttgctttatttcttatt |
43715857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 43716611 - 43716542
Alignment:
| Q |
13 |
aatatcactggacatgtggaatctttggccattgatgatggaaacactatcagattgggctatttatttc |
82 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43716611 |
aatatcactggacatgtggaatctttggccattgatgatggaaacactatcagattgggctattgatttc |
43716542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 581 - 747
Target Start/End: Original strand, 6816638 - 6816803
Alignment:
| Q |
581 |
ggaggacagtgatatcgagccagctccaaagctgattgaaattgtcttcctaaactgcagaggactggtggaccactgggttgagccatatctcagaatt |
680 |
Q |
| |
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|||||| | |||||| | ||||||||||||||| |||||| ||||||||| || || ||||||| ||||| ||||||||||| |||||||| |||||| |
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| T |
6816638 |
ggaggataatgatattgtgccagctccaaagcttattgaagttgtcttccagaattgtagaggacaagtggatcactgggttgaaccatatcttagaatt |
6816737 |
T |
|
| Q |
681 |
acaattgaaagtttgcatagaactggaaaaatcatatttgaaatgtcttctcattcaagtggtaagg |
747 |
Q |
| |
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|| ||||| | ||| || | ||| ||||| |||||||||| |||||| |||| ||| |||||||| |
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| T |
6816738 |
acggttgaacgcttgaatcggact-gaaaagacatatttgaagtgtcttttcatgcaattggtaagg |
6816803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 6814765 - 6814847
Alignment:
| Q |
13 |
aatatcactggacatgtggaatctttggccattgatgatggaaacactatcagattgggctatttatttctttccaagtatgg |
95 |
Q |
| |
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|||||| ||||| ||||||| |||||||||| ||||||||||| || | |||||||||| || |||| ||||||||||||| |
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| T |
6814765 |
aatatctctggatatgtggagtctttggccagtgatgatggaagcattggcagattgggcaatcgatttttttccaagtatgg |
6814847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 215; Significance: 1e-117; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 395 - 810
Target Start/End: Original strand, 52891346 - 52891770
Alignment:
| Q |
395 |
tatcaacagagtttgtggaatatgatttcctctgtatgtgatgtgatctttgaataattatcattaattgagccaccacctgca------ggagtgggat |
488 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||| |||||||||||| ||| |||||| |
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| T |
52891346 |
tatcaacagagtttgtggaatatgatttcctctgtaagtgat-----ctttgaattattatcattaatttggccaccacctgctaggactggaatgggat |
52891440 |
T |
|
| Q |
489 |
ctggtgattgtaaatgattgttaacttgttattattttttctagcttcttcttcttgt--------tgtctct---------gattacggcagataaaaa |
571 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||| | | ||||| |||||||||||| |
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| T |
52891441 |
ctggtgattgtaaatgattgttaactt---attattttttctagcttcttcttgttgtctctgatttgtatttcacattgcagattatggcagataaaaa |
52891537 |
T |
|
| Q |
572 |
tatggaggaggaggacagtgatatcgagccagctccaaagctgattgaaattgtcttcctaaactgcagaggactggtggaccactgggttgagccatat |
671 |
Q |
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||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
52891538 |
tatggag------gacagtgatattgagccagctccaaagctgattgaaattgtcttcctaaactgcagaggactggtggaccactgggttgagccgtat |
52891631 |
T |
|
| Q |
672 |
ctcagaattacaattgaaagtttgcatagaactggaaaaatcatatttgaaatgtcttctcattcaagtggtaaggttttaatataatctttattgacat |
771 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
52891632 |
ctcagaattacaattgaacgtttgcatagaactgg-aaaatcatatttgaaatgtcttctcattcaagtggtaaggttttaatagaatcttcattgacat |
52891730 |
T |
|
| Q |
772 |
gcacaaatgagatagttgg-ttctgttgctttatttctta |
810 |
Q |
| |
|
||||||||||||||||||| | |||||||||| ||||||| |
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|
| T |
52891731 |
gcacaaatgagatagttggctcctgttgctttctttctta |
52891770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 13 - 211
Target Start/End: Original strand, 52887245 - 52887439
Alignment:
| Q |
13 |
aatatcactggacatgtggaatctttggccattgatgatggaaacactatcagattgggctatttatttctttccaagtatggctctcaaatacatctga |
112 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||| ||||| ||| |
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| T |
52887245 |
aatatcactggacatgtggaacctttggccattgatgatggaagcactatcagattgggctattgatttcttttcaagtatggctctcaactacatttga |
52887344 |
T |
|
| Q |
113 |
ctacaattcatctcaacttatcttcttcgccttacaaaagttcattacttttcaacttc-tttttatatgttaataacatagaaagctagagatgaatca |
211 |
Q |
| |
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| ||||| ||||||||||| |||| ||||| |||||||||| ||| ||| ||||| |||||| |||||||||| |||| |||||||||||||||| |
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|
| T |
52887345 |
ttgcaatt-atctcaactta---tctttgccttccaaaagttcagtac-tttggacttcttttttacttgttaataacttagacagctagagatgaatca |
52887439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 243 - 315
Target Start/End: Original strand, 52890957 - 52891029
Alignment:
| Q |
243 |
tattcaaaaacatggaatatctttcaaatattttcctggttgctctgacatctaagttaatataagtctttat |
315 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
52890957 |
tattcaaaaacatggaatatctgtcaaatattttcctggttgctctgacatttaagttaatataagtctttat |
52891029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 318 - 380
Target Start/End: Original strand, 52891238 - 52891300
Alignment:
| Q |
318 |
attttctacatgtttactcgattagtttattctgcagatattctggtttctttggacaattat |
380 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||||| ||||| |||||||||||||| |
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|
| T |
52891238 |
attttctacatatttacttgattagtttattctgcagatattatggttcctttggacaattat |
52891300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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