View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2651_low_7 (Length: 709)
Name: NF2651_low_7
Description: NF2651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2651_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 543; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 1 - 689
Target Start/End: Original strand, 17130538 - 17131230
Alignment:
| Q |
1 |
aggttttaaataatggtcaagtttgcggttctgttaaggattttgtgatttcagttgttatgcatattgcgttgcggattgtggtcgtcgcagtgtgaat |
100 |
Q |
| |
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|||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||| |
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| T |
17130538 |
aggttttaaataatggtcgaggttgcggttctgtgaaggattttgtgatttcagttgttatgcatattgcgctgcggattgtggccgtcgcggtgtgaat |
17130637 |
T |
|
| Q |
101 |
taatgataacatttcacaactcataatagcatcaataacttaaattagagacaaatttgaagttgtgaactagataaagagcttaaaggagataacatta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
17130638 |
taatgataacatttcacaactcataatagcatcaataacttaaattagagacaaatttgaatttgtgaactagagaaagagcttaaaggagataacatta |
17130737 |
T |
|
| Q |
201 |
tgtgatttgtgtccatctcaattgaaaaataaagagattactcgtctattgttacgaatgacattttgttgcggctgtaatggtgtttcgtcgcacgttt |
300 |
Q |
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|||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
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| T |
17130738 |
tgtgatctgtatccatctcaattgaaaaataaagaaattactcgtctattgttacgaatgacattttgttacggctgtaatggtgtttcgtcgcacattt |
17130837 |
T |
|
| Q |
301 |
gacaacgttttgtcgtgannnnnnncttcttttcattgtataaaaacgagaaaaactgaaacggtgtctacctatacctttttaaaacagctttttcttg |
400 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||| |||||||||| |||| ||||||||||| |
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| T |
17130838 |
gacaacgttttgtcgtgattttttttttcttttcattgtataaaaacgagaaaaactataacggtgtttaccgatacctttttgaaacggctttttcttg |
17130937 |
T |
|
| Q |
401 |
gtaatggaactttatttaaaaccttccctaaaactcgcacacataaattgaaactattttggttaaagtggcacaatcatggccacttaaataaaaaatt |
500 |
Q |
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||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
17130938 |
gtaatggaactttatttaaaaccatccctaaaagtcgcacacataaattgaaactattttggttaaagtggcacaatcatggccacttaaatcaaaaatt |
17131037 |
T |
|
| Q |
501 |
taatttaattttccagtgattgacaacttcatggttgctgcagggcacatgaagcctcttaactgcaccgaggtgatttgccataaacct----ttggtt |
596 |
Q |
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||||||||||||| ||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
17131038 |
taatttaattttctagtgattgacaacttcatggttggtgcagggcagaggaagcctcttaactgcaccgaggtgatttgccataaaccttatgttggtt |
17131137 |
T |
|
| Q |
597 |
acattaaaatcaatattaatggctcatcaacgagtaacccttccaaagctgcaaggggggtctatatttagagactcaagggattcttgtcac |
689 |
Q |
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| T |
17131138 |
atattaaaatcaatattaatggctcatcaacgagtaacccttccaaagctgcaaggggggtctatatttagagactcaagggattcttgtcac |
17131230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 31743001 - 31742947
Alignment:
| Q |
134 |
aataacttaaattagagacaaatttgaagttgtgaactagataaagagcttaaag |
188 |
Q |
| |
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|||||||||||||||||| | |||||||||| |||| |||||||||||| ||||| |
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|
| T |
31743001 |
aataacttaaattagagatagatttgaagttttgaagtagataaagagcataaag |
31742947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 134 - 196
Target Start/End: Complemental strand, 33049238 - 33049177
Alignment:
| Q |
134 |
aataacttaaattagagacaaatttgaagttgtgaactagataaagagcttaaaggagataac |
196 |
Q |
| |
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| T |
33049238 |
aataacttgaaatagagatagatttgaagtt-taaactagataaagagcataaaggagataac |
33049177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 208
Target Start/End: Original strand, 20141598 - 20141669
Alignment:
| Q |
137 |
aacttaaattagagacaaatttgaagttgtgaactagataaagagcttaaaggagataacattatgtgattt |
208 |
Q |
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||||||||||||||| | ||||||| || | || |||| ||||||| |||||||||||| ||||||| |||| |
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| T |
20141598 |
aacttaaattagagatagatttgaaattttcaattagagaaagagcctaaaggagataaaattatgtaattt |
20141669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 208
Target Start/End: Original strand, 14867300 - 14867373
Alignment:
| Q |
135 |
ataacttaaattagagacaaatttgaagttgtgaactagataaagagcttaaaggagataacattatgtgattt |
208 |
Q |
| |
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||||||||||||||||| | ||||||||| | ||||||| ||||||| | ||| ||||||||| |||| |||| |
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| T |
14867300 |
ataacttaaattagagataggtttgaagttttaaactagagaaagagcctcaagaagataacatcatgtaattt |
14867373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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