View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2651_low_8 (Length: 689)
Name: NF2651_low_8
Description: NF2651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2651_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 210 - 572
Target Start/End: Complemental strand, 240096 - 239734
Alignment:
| Q |
210 |
tgggttaatcacttttaattaattcatt----catttgattttgaaggcatatgattctgaactagaaaacaataagcatgaacttttaacatctgtcca |
305 |
Q |
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| T |
240096 |
tgggttaatcacttttaattaattaattaattcatttgattttgaaggcatatgattctgaactagaaaacaataagcatgagcttttaacatctgtcca |
239997 |
T |
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| Q |
306 |
agacacacaaagaggactcttaacaactcctcatcaacgttcttctattgaggaagctcttgttagttactaatactagtactactctattttcattcaa |
405 |
Q |
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| T |
239996 |
agacacacaaagaggactcttaacaactcctcatcaacgttcttctattgaggaagctcttgttagttactaatactagtactactctattttcattcaa |
239897 |
T |
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| Q |
406 |
tttcgagcattctttctttctttctttataatcaatcatcaatgtcaggtgaatgtggaaggaagtaacatgggtgacccaattgattttaacaagttgg |
505 |
Q |
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| T |
239896 |
tttcgagcattctttcttt----ctttataatcaatcatcaatgtcaggtgaatgtggaaggaagtaacatgggtgacccaattgattttaacaagttgg |
239801 |
T |
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| Q |
506 |
atggaacttggcgcttgcagtatacttccgctcctgatgttctcattctcttccaagctgctgctac |
572 |
Q |
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| T |
239800 |
atggaacttggcgcttgcagtatacttccgctcctgatgttctcattctcttccaagctgctgctac |
239734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 240275 - 240111
Alignment:
| Q |
19 |
agttgggaaaatgaatttggctttcaatttgaatttgagttcatcactatgtattcataggaaaaggagaagccacacactcaacaatgttaataggagg |
118 |
Q |
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| T |
240275 |
agttgggaaaatgaatttggctttcaatttgaatttgagttcatcactatgtattcataggagaaggagaagccacacactcaacaatgttaataggagg |
240176 |
T |
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| Q |
119 |
aaatcaaaatccatttccatggctatggcatcttctgttactcaggtaaggtttccattctaatt |
183 |
Q |
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| T |
240175 |
aaatcaaaatccatttccatggctatggcatcttctgttactcaggtaaggtttccattctaatt |
240111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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