View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2651_low_9 (Length: 640)

Name: NF2651_low_9
Description: NF2651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2651_low_9
NF2651_low_9
[»] chr4 (17 HSPs)
chr4 (14-624)||(36079709-36080319)
chr4 (90-502)||(36107695-36108107)
chr4 (73-381)||(36100557-36100865)
chr4 (90-458)||(34971538-34971906)
chr4 (97-494)||(21482435-21482832)
chr4 (90-239)||(36090228-36090377)
chr4 (63-314)||(38090627-38090878)
chr4 (100-257)||(38125518-38125675)
chr4 (69-213)||(38058494-38058638)
chr4 (69-169)||(38072866-38072966)
chr4 (100-236)||(38129492-38129628)
chr4 (99-236)||(38145662-38145799)
chr4 (69-169)||(38086376-38086476)
chr4 (69-167)||(38081953-38082051)
chr4 (69-230)||(38061816-38061977)
chr4 (124-192)||(38149514-38149582)
chr4 (336-377)||(36090474-36090515)
[»] chr6 (1 HSPs)
chr6 (90-502)||(6838456-6838868)
[»] chr2 (9 HSPs)
chr2 (90-377)||(8338445-8338732)
chr2 (97-257)||(11933731-11933891)
chr2 (97-257)||(11946952-11947112)
chr2 (97-235)||(11835001-11835139)
chr2 (97-325)||(11821135-11821363)
chr2 (112-167)||(11917650-11917705)
chr2 (115-233)||(11803587-11803705)
chr2 (64-173)||(11786986-11787095)
chr2 (124-163)||(35538966-35539005)
[»] chr3 (3 HSPs)
chr3 (127-185)||(2152477-2152535)
chr3 (127-185)||(2176136-2176194)
chr3 (79-170)||(2196691-2196782)


Alignment Details
Target: chr4 (Bit Score: 575; Significance: 0; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 14 - 624
Target Start/End: Complemental strand, 36080319 - 36079709
Alignment:
Q  14 caccttcttctacactcttctgcactttgaaaactgtcactttaggagtcacagaaacaagtttaatcttccatttaagaatgacaccaaaacttgcacc 113  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36080319 caccttcttctacactcttttgcactttgaaaactgtcactttaggagtcacagaaacaagtttaatcttccatttaagaatgacaccaaaacttgcacc 36080220  T
Q  114 accaccaccccttatagcccaaaaaagatcttctcccattgattttctatcaagaatattaccattaacatcaacaatttttgcatcaattatattatca 213  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  36080219 accaccaccccttatagcccaaaataaatcttctcccattgattttctatcaagaatactaccattaacatcaacaatttttgcgtcaattatattatca 36080120  T
Q  214 acagaaagaccaaattttctcattaaattaccataaccaccacctgaaaaatgaccaccagtagctactgtaggacacaccccagctggaaaagcatgaa 313  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36080119 acagatagaccaaattttctcattaaattaccataaccaccacctgaaaaatgaccaccagtagctactgtaggacacaccccagctggaaaagcatgaa 36080020  T
Q  314 cttgactcttctttgcaatgtgataataaaccttaccaagtgttgcacctgcttcaacccatgctgttccgttttcaacgtcaatatcaactgaatcatg 413  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36080019 cttgactcttctttgcaatgtaataataaaccttaccaagtgttgcacctgcttcaacccatgctgttccgttttcaacgtcaatatcaactgaatcatg 36079920  T
Q  414 atgaaacatgtcaagtataataaaaggaacatctgatacatatgaaaggccttcacaatcatggccaccgcttcggattctaatttgaagatcatattct 513  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  36079919 atgaaacatgtcaagtataataaaaggaacatctgatacatatgaaaggccttcacaatcatggccaccgcttcggattctaatttgaagatcatatttt 36079820  T
Q  514 tttgcacatataattgttccttgcacgtgtgacacatgcagggatgttacaattgcaagaggttttggtgctgttggtgatgaaaatctgttgttgtatg 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  36079819 tttgcacatataattgttccttgcacgtgtgacacatgcagggatgttacaattgcaagaggttttggtgctgttcgtgatgaaaatctgttgttgtatg 36079720  T
Q  614 tgtgcatgtgt 624  Q
    |||||||||||    
T  36079719 tgtgcatgtgt 36079709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 90 - 502
Target Start/End: Complemental strand, 36108107 - 36107695
Alignment:
Q  90 aagaatgacaccaaaacttgcaccaccaccaccccttatagcccaaaaaagatcttctcccattgattttctatcaagaatattaccattaacatcaaca 189  Q
    |||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||     
T  36108107 aagaataacaccaaaactagcaccaccaccacctcttatagcccaaaaaagatcttctcccattgattttctatcaagaatattacccttaacatcaacc 36108008  T
Q  190 atttttgcatcaattatattatcaacagaaagaccaaattttctcattaaattaccataaccaccacctgaaaaatgaccaccagtagctactgtaggac 289  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||| || ||||||||||||| | |||  |||  ||    
T  36108007 atttttgcatcaataatattatcaacagaaagaccaaattttctcatcaaattaccatacccaccaccagagaaatgaccaccagcacctagagtaaaac 36107908  T
Q  290 acaccccagctggaaaagcatgaacttgactcttctttgcaatgtgataataaaccttaccaagtgttgcacctgcttcaacccatgctgttccgttttc 389  Q
    | ||||||| ||| |||||| |    |  || || |||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||   | ||     
T  36107907 agaccccagatgggaaagcaagcttgttgcttttatttgcaatgttataataaatcttaccaagtgttgcacctgattcaacccatgctgttgattcttg 36107808  T
Q  390 aacgtcaatatcaactgaatcatgatgaaacatgtcaagtataataaaaggaacatctgatacatatgaaaggccttcacaatcatggccaccgcttcgg 489  Q
     |  |  |||||||||||||   |||||||||||||||||||||||||||| |||||||||||||||||||  |||||| | || || || || |||||     
T  36107807 taaattgatatcaactgaattgagatgaaacatgtcaagtataataaaaggcacatctgatacatatgaaaaaccttcatagtcgtgaccgccacttcga 36107708  T
Q  490 attctaatttgaa 502  Q
    |||||||| ||||    
T  36107707 attctaatctgaa 36107695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 73 - 381
Target Start/End: Complemental strand, 36100865 - 36100557
Alignment:
Q  73 agtttaatcttccatttaagaatgacaccaaaacttgcaccaccaccaccccttatagcccaaaaaagatcttctcccattgattttctatcaagaatat 172  Q
    |||||||  ||||||  |||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||    
T  36100865 agtttaagtttccatgaaagaataacaccaaaactagcaccaccaccaccccttatagcccaaaatagatcttctcccattgactttctatcaaggatat 36100766  T
Q  173 taccattaacatcaacaatttttgcatcaattatattatcaacagaaagaccaaattttctcattaaattaccataaccaccacctgaaaaatgaccacc 272  Q
    ||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||| |||||||| || |||||||||||    
T  36100765 taccattgacatcaacaatttttgcatcaatgatattatcaatagaaagaccaaattttctcatcaaattaccatacccaccaccagagaaatgaccacc 36100666  T
Q  273 agtagctactgtaggacacaccccagctggaaaagcatgaacttgactcttctttgcaatgtgataataaaccttaccaagtgttgcacctgcttcaacc 372  Q
    || | |||  | |  ||| ||||||| ||| |||||| ||   | | | ||||||| ||||  |||||||| |||||||||||||||||| |||||||||    
T  36100665 agcacctagagaaaaacagaccccagatgggaaagcaagagaattatttttctttgaaatggtataataaatcttaccaagtgttgcaccagcttcaacc 36100566  T
Q  373 catgctgtt 381  Q
    |||| ||||    
T  36100565 catgttgtt 36100557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 90 - 458
Target Start/End: Original strand, 34971538 - 34971906
Alignment:
Q  90 aagaatgacaccaaaacttgcaccaccaccaccccttatagcccaaaaaagatcttctcccattgattttctatcaagaatattaccattaacatcaaca 189  Q
    |||||| ||||||||||| |||||||||||||| || ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  34971538 aagaataacaccaaaactagcaccaccaccacctctgatagcccaaaagagatcttctcccattgactttctatcaagaatattaccattgacatcaaca 34971637  T
Q  190 atttttgcatcaattatattatcaacagaaagaccaaattttctcattaaattaccataaccaccacctgaaaaatgaccaccagtagctactgtaggac 289  Q
    |||||||| ||||| |||||||||| ||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||| | |||| |||  ||    
T  34971638 atttttgcgtcaatgatattatcaatagaaagaccaaattttctcatcaaatttccataaccaccaccagaaaaatgaccaccagcacctacagtaaaac 34971737  T
Q  290 acaccccagctggaaaagcatga-acttgactcttctttgcaatgtgataataaaccttaccaagtgttgcacctgcttcaacccatgctgttccgtttt 388  Q
    | ||||| | ||||||||||  | | |||  | || ||| ||||   |||||||| |||||||||||||||||||| ||||||||||| ||||   | ||    
T  34971738 agaccccggatggaaaagcaaaagaattg-tttttatttccaattgtataataaatcttaccaagtgttgcacctgattcaacccatgttgttgattctt 34971836  T
Q  389 caacgtcaatatcaactgaatcatgatgaaacatgtcaagtataataaaaggaacatctgatacatatga 458  Q
      |  |  | |||||||||||   | |||||||||||||||| ||||||||| |||||||||| ||||||    
T  34971837 gtaaattgacatcaactgaattgaggtgaaacatgtcaagtacaataaaaggcacatctgataaatatga 34971906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 97 - 494
Target Start/End: Complemental strand, 21482832 - 21482435
Alignment:
Q  97 acaccaaaacttgcaccaccaccaccccttatagcccaaaaaagatcttctcccattgattttctatcaagaatattaccattaacatcaacaatttttg 196  Q
    |||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  21482832 acaccataactagcaccaccaccacctcttatagcccaaaaaagatcttctcccattgattttctatcaaggatattaccattcacatcaacaatttttg 21482733  T
Q  197 catcaattatattatcaacagaaagaccaaattttctcattaaattaccataaccaccacctgaaaaatgaccaccagtagctactgtaggacacacccc 296  Q
    | ||||| |||||||||||||||||||||||||||||||| | ||| ||||| |||||||| ||||||||||||||||   | || | |  ||| || ||    
T  21482732 cgtcaataatattatcaacagaaagaccaaattttctcatcatatttccatatccaccaccagaaaaatgaccaccagctccgacagaaaaacaaacgcc 21482633  T
Q  297 agctggaaaagcatgaacttgactcttctttgcaatgtgataataaaccttaccaagtgttgcacctgcttcaacccatgctgttccgttttcaacgtca 396  Q
     | ||| |||||| ||   | | | |||||| |||||  |||||||| ||| |||||||||||||||| |||||||||||||||| | | ||  |  |      
T  21482632 ggatgggaaagcaagagagttatttttctttccaatggtataataaagctttccaagtgttgcacctgattcaacccatgctgtttcttcttgtaaattg 21482533  T
Q  397 atatcaactgaatcatgatgaaacatgtcaagtataataaaaggaacatctgatacatatgaaaggccttcacaatcatggccaccgcttcggattct 494  Q
    | |||||||||||   |||||| || ||||| ||||| |||||| || |||||||||||||| |  |||||| | || ||||| || |||||||||||    
T  21482532 acatcaactgaattgagatgaagcaagtcaattataacaaaaggcacgtctgatacatatgagaaaccttcaaagtcgtggccgccacttcggattct 21482435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 90 - 239
Target Start/End: Original strand, 36090228 - 36090377
Alignment:
Q  90 aagaatgacaccaaaacttgcaccaccaccaccccttatagcccaaaaaagatcttctcccattgattttctatcaagaatattaccattaacatcaaca 189  Q
    |||||| ||||||||||| || ||||||||||| |||||||||||||||||||||| | | |||||| |||||||||| ||||||||||| ||||| |||    
T  36090228 aagaataacaccaaaactagccccaccaccacctcttatagcccaaaaaagatctttttctattgatcttctatcaaggatattaccattgacatcgaca 36090327  T
Q  190 atttttgcatcaattatattatcaacagaaagaccaaattttctcattaa 239  Q
    ||||||||||||||  ||||||||| ||||||||||||||||||||||||    
T  36090328 atttttgcatcaatggtattatcaatagaaagaccaaattttctcattaa 36090377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 63 - 314
Target Start/End: Complemental strand, 38090878 - 38090627
Alignment:
Q  63 cacagaaacaagtttaatcttccatttaagaatgacaccaaaacttgcaccaccaccaccccttatagcccaaaaaagatcttctcccattgattttcta 162  Q
    ||||||||| |  |||||||||||   || ||| ||||||||||| || ||||||||||| || ||||||||||||| |||||| ||||||||||  |||    
T  38090878 cacagaaaccaacttaatcttccaagaaacaataacaccaaaactagctccaccaccacctctaatagcccaaaaaacatcttcccccattgattcccta 38090779  T
Q  163 tcaagaatattaccattaacatcaacaatttttgcatcaattatattatcaacagaaagaccaaattttctcattaaattaccataaccaccacctgaaa 262  Q
    ||||| |   | |||| |||||||||||| || ||||| |  |||||||||||||| |  |||||||||||||| |  |||||||| || |||||   ||    
T  38090778 tcaagcactcttccatcaacatcaacaatcttagcatccaaaatattatcaacagataacccaaattttctcatcatgttaccataccccccaccactaa 38090679  T
Q  263 aatgaccaccagtagctactgtaggacacaccccagctggaaaagcatgaac 314  Q
    |||| ||||||  | | || |||||||| ||||||||||||||| |||||||    
T  38090678 aatgtccaccaacaccaacagtaggacaaaccccagctggaaaaccatgaac 38090627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 100 - 257
Target Start/End: Complemental strand, 38125675 - 38125518
Alignment:
Q  100 ccaaaacttgcaccaccaccaccccttatagcccaaaaaagatcttctcccattgattttctatcaagaatattaccattaacatcaacaatttttgcat 199  Q
    ||||||||||| || ||||| || || |||||||||||||| ||||| ||||||||||| |||||||||||  |||||||||||||||||||||  ||||    
T  38125675 ccaaaacttgctcctccacctcctctaatagcccaaaaaagttcttcacccattgatttcctatcaagaatcctaccattaacatcaacaatttcagcat 38125576  T
Q  200 caattatattatcaacagaaagaccaaattttctcattaaattaccataaccaccacc 257  Q
    |||  | |||||||| ||| |  |||||||||||||| |  |||||||| || |||||    
T  38125575 caacaacattatcaatagacaacccaaattttctcatcatgttaccataccctccacc 38125518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 69 - 213
Target Start/End: Complemental strand, 38058638 - 38058494
Alignment:
Q  69 aacaagtttaatcttccatttaagaatgacaccaaaacttgcaccaccaccaccccttatagcccaaaaaagatcttctcccattgattttctatcaaga 168  Q
    |||||||||||||||||||  ||  ||||| ||||||||||| || |||||||| || ||||||||||| | |||||| ||||||| || ||| ||||||    
T  38058638 aacaagtttaatcttccatgaaattatgactccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttcacccattgcttctctgtcaaga 38058539  T
Q  169 atattaccattaacatcaacaatttttgcatcaattatattatca 213  Q
    |   |||| || |||||||  || |  ||||||||||||||||||    
T  38058538 aacctacccttcacatcaattatgtgagcatcaattatattatca 38058494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 69 - 169
Target Start/End: Complemental strand, 38072966 - 38072866
Alignment:
Q  69 aacaagtttaatcttccatttaagaatgacaccaaaacttgcaccaccaccaccccttatagcccaaaaaagatcttctcccattgattttctatcaaga 168  Q
    |||||||||||||||||||  ||  ||||||||||||||||| || |||||||| || ||||||||||| | |||||| ||||||| || ||| ||||||    
T  38072966 aacaagtttaatcttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttcacccattgcttctctgtcaaga 38072867  T
Q  169 a 169  Q
    |    
T  38072866 a 38072866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 100 - 236
Target Start/End: Complemental strand, 38129628 - 38129492
Alignment:
Q  100 ccaaaacttgcaccaccaccaccccttatagcccaaaaaagatcttctcccattgattttctatcaagaatattaccattaacatcaacaatttttgcat 199  Q
    ||||||||||| || ||||| || || |||||||||||||||||||| ||||| | |||  | ||||||||  ||||||| ||||||| |||||| ||||    
T  38129628 ccaaaacttgctcctccacctcctctaatagcccaaaaaagatcttcccccatagttttcttgtcaagaattctaccattgacatcaataattttagcat 38129529  T
Q  200 caattatattatcaacagaaagaccaaattttctcat 236  Q
    |||  |||||||||| ||| |  || |||||||||||    
T  38129528 caacaatattatcaatagataacccgaattttctcat 38129492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 236
Target Start/End: Complemental strand, 38145799 - 38145662
Alignment:
Q  99 accaaaacttgcaccaccaccaccccttatagcccaaaaaagatcttctcccattgattttctatcaagaatattaccattaacatcaacaatttttgca 198  Q
    |||||| ||| |||| |||||||| |||||||||||||| ||||| |||||||| | |||||| |||||||| ||||| ||  ||||||| |||   |||    
T  38145799 accaaagcttccacctccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaagaatgttacccttcgcatcaacgattcgagca 38145700  T
Q  199 tcaattatattatcaacagaaagaccaaattttctcat 236  Q
    || |  | ||||||||||  ||||||| ||||||||||    
T  38145699 tctaagacattatcaacaccaagaccatattttctcat 38145662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 69 - 169
Target Start/End: Complemental strand, 38086476 - 38086376
Alignment:
Q  69 aacaagtttaatcttccatttaagaatgacaccaaaacttgcaccaccaccaccccttatagcccaaaaaagatcttctcccattgattttctatcaaga 168  Q
    |||||||||||||||||||  ||  ||||||||||||||||| || |||||||| || ||||||||||| | ||| || ||||||| || ||| ||||||    
T  38086476 aacaagtttaatcttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaagaaatcctcacccattgcttctctgtcaaga 38086377  T
Q  169 a 169  Q
    |    
T  38086376 a 38086376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 167
Target Start/End: Complemental strand, 38082051 - 38081953
Alignment:
Q  69 aacaagtttaatcttccatttaagaatgacaccaaaacttgcaccaccaccaccccttatagcccaaaaaagatcttctcccattgattttctatcaag 167  Q
    ||||||||| |||||||||  ||  ||||| ||||||||||| || |||||||| || ||||||||||||  |||||| ||||||| || ||| |||||    
T  38082051 aacaagttttatcttccatgaaattatgactccaaaacttgctcctccaccacctctaatagcccaaaaataatcttcacccattgcttctctgtcaag 38081953  T

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Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 69 - 230
Target Start/End: Original strand, 38061816 - 38061977
Alignment:
Q  69 aacaagtttaatcttccatttaagaatgacaccaaaacttgcaccaccaccaccccttatagcccaaaaaagatcttctcccattgattttctatcaaga 168  Q
    ||||||||||| |||||||  ||  ||||| ||||||||||| || ||||| || || ||||||||||||| ||| || ||||||| || ||| ||||||    
T  38061816 aacaagtttaaccttccatgaaattatgactccaaaacttgctcctccacctcctctaatagcccaaaaaaaatcctcacccattgcttctctgtcaaga 38061915  T
Q  169 atattaccattaacatcaacaatttttgcatcaattatattatcaacagaaagaccaaattt 230  Q
    |   |||| || |||||||  || |  |||||||| ||||||||| | | |||||| |||||    
T  38061916 aacctacccttcacatcaattatgtgagcatcaataatattatcagctgcaagaccgaattt 38061977  T

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Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 124 - 192
Target Start/End: Complemental strand, 38149582 - 38149514
Alignment:
Q  124 cttatagcccaaaaaagatcttctcccattgattttctatcaagaatattaccattaacatcaacaatt 192  Q
    ||||| |||||||| || ||||||||||||| ||| || |||||||| || |||||| |||||||||||    
T  38149582 cttattgcccaaaataggtcttctcccattgctttcctgtcaagaatttttccattagcatcaacaatt 38149514  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 377
Target Start/End: Original strand, 36090474 - 36090515
Alignment:
Q  336 ataataaaccttaccaagtgttgcacctgcttcaacccatgc 377  Q
    |||||||| |||||||||| ||||||||| ||||||||||||    
T  36090474 ataataaatcttaccaagtattgcacctgattcaacccatgc 36090515  T

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Target: chr6 (Bit Score: 173; Significance: 1e-92; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 90 - 502
Target Start/End: Complemental strand, 6838868 - 6838456
Alignment:
Q  90 aagaatgacaccaaaacttgcaccaccaccaccccttatagcccaaaaaagatcttctcccattgattttctatcaagaatattaccattaacatcaaca 189  Q
    |||||| ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6838868 aagaataacaccaaaactagcaccaccaccacctcttatggcccaaaaaagatcttctcccattgattttctatcaagaatattacccttaacatcaaca 6838769  T
Q  190 atttttgcatcaattatattatcaacagaaagaccaaattttctcattaaattaccataaccaccacctgaaaaatgaccaccagtagctactgtaggac 289  Q
    |||||||| ||||| |||||||||| ||||||||||||||||||||| ||||| ||||| |||||||| || ||||||||||||| | |||| |||   |    
T  6838768 atttttgcgtcaataatattatcaatagaaagaccaaattttctcatcaaatttccatacccaccaccagagaaatgaccaccagcacctacagtaaagc 6838669  T
Q  290 acaccccagctggaaaagcatgaacttgactcttctttgcaatgtgataataaaccttaccaagtgttgcacctgcttcaacccatgctgttccgttttc 389  Q
    ||||||||| ||| |||||| |    |  || ||||||||||||  |||||||| |||||||||||||||||||| ||||||||||||||||   | ||     
T  6838668 acaccccagatgggaaagcaagcttgttgcttttctttgcaatggtataataaatcttaccaagtgttgcacctgattcaacccatgctgttgattcttg 6838569  T
Q  390 aacgtcaatatcaactgaatcatgatgaaacatgtcaagtataataaaaggaacatctgatacatatgaaaggccttcacaatcatggccaccgcttcgg 489  Q
     |  |  | |||||| ||||   ||||||||||||||||||||| |||||| ||||||||||||||||||   |||||| | || || ||||| |||||     
T  6838568 taaattgacatcaacagaattgagatgaaacatgtcaagtataacaaaaggcacatctgatacatatgaacaaccttcatagtcgtgaccaccacttcga 6838469  T
Q  490 attctaatttgaa 502  Q
    |||||||| ||||    
T  6838468 attctaatctgaa 6838456  T

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Target: chr2 (Bit Score: 141; Significance: 1e-73; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 90 - 377
Target Start/End: Complemental strand, 8338732 - 8338445
Alignment:
Q  90 aagaatgacaccaaaacttgcaccaccaccaccccttatagcccaaaaaagatcttctcccattgattttctatcaagaatattaccattaacatcaaca 189  Q
    |||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||| |    
T  8338732 aagaataacaccaaaactagcaccaccaccacccctaatagcccaaaacagatcttctcccattgattttctatcaagagtattaccattgacatcaata 8338633  T
Q  190 atttttgcatcaattatattatcaacagaaagaccaaattttctcattaaattaccataaccaccacctgaaaaatgaccaccagtagctactgtaggac 289  Q
    |||||||| ||||| ||||||||||||||||||||||| |||||||| ||||| ||||| |||||||| |||||||||||||||| | ||| ||||| ||    
T  8338632 atttttgcgtcaatgatattatcaacagaaagaccaaactttctcatcaaatttccatacccaccacccgaaaaatgaccaccagcacctagtgtagaac 8338533  T
Q  290 acaccccagctggaaaagcatga-acttgactcttctttgcaatgtgataataaaccttaccaagtgttgcacctgcttcaacccatgc 377  Q
    | |||||||  || |||||| || | |||  | ||||||||||||  |||||||| |||||| | ||||||||| | ||||||||||||    
T  8338532 agaccccagacgggaaagcaagagaattg-tttttctttgcaatggtataataaatcttaccgattgttgcaccagattcaacccatgc 8338445  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 97 - 257
Target Start/End: Complemental strand, 11933891 - 11933731
Alignment:
Q  97 acaccaaaacttgcaccaccaccaccccttatagcccaaaaaagatcttctcccattgattttctatcaagaatattaccattaacatcaacaatttttg 196  Q
    |||||||| || || |||||||||||  | ||||||||||||||||||||||||||||||||||||||||| |   ||||||||||||| |  |||| ||    
T  11933891 acaccaaagctagctccaccaccacctttaatagcccaaaaaagatcttctcccattgattttctatcaagcaatctaccattaacatcgattatttgtg 11933792  T
Q  197 catcaattatattatcaacagaaagaccaaattttctcattaaattaccataaccaccacc 257  Q
    |||| || ||||||||||| ||||||||| |||||||||| |  |||||||| ||||||||    
T  11933791 catcgataatattatcaactgaaagaccatattttctcatcatgttaccatatccaccacc 11933731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 97 - 257
Target Start/End: Complemental strand, 11947112 - 11946952
Alignment:
Q  97 acaccaaaacttgcaccaccaccaccccttatagcccaaaaaagatcttctcccattgattttctatcaagaatattaccattaacatcaacaatttttg 196  Q
    |||||||| || || |||||||||||  | ||||||||||||||||||||||||||||||||||||||||| |   ||||||||||||| |  |||| ||    
T  11947112 acaccaaagctagctccaccaccacctttaatagcccaaaaaagatcttctcccattgattttctatcaagcaatctaccattaacatcgattatttgtg 11947013  T
Q  197 catcaattatattatcaacagaaagaccaaattttctcattaaattaccataaccaccacc 257  Q
    |||| || ||||||||||| ||||||||| |||||||||| |  |||||||| ||||||||    
T  11947012 catcgataatattatcaactgaaagaccatattttctcatcatgttaccatatccaccacc 11946952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 97 - 235
Target Start/End: Original strand, 11835001 - 11835139
Alignment:
Q  97 acaccaaaacttgcaccaccaccaccccttatagcccaaaaaagatcttctcccattgattttctatcaagaatattaccattaacatcaacaatttttg 196  Q
    ||||||||||| ||||||||||| || | ||||||||||||||||||||| ||||||||||| ||||  | ||   | || ||||||||||||||||  |    
T  11835001 acaccaaaactagcaccaccaccgcctcgtatagcccaaaaaagatcttcacccattgatttcctattcaaaagccttcccttaacatcaacaatttcag 11835100  T
Q  197 catcaattatattatcaacagaaagaccaaattttctca 235  Q
    ||||||| |||||||||||||| | |||| |||||||||    
T  11835101 catcaataatattatcaacagataaaccatattttctca 11835139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 97 - 325
Target Start/End: Complemental strand, 11821363 - 11821135
Alignment:
Q  97 acaccaaaacttgcaccaccaccaccccttatagcccaaaaaagatcttctcccattgattttctatcaagaatattaccattaacatcaacaatttttg 196  Q
    ||||| ||||| ||||||||||||||   ||||||||||||||||||||| ||||||||||| ||||  | ||   |||| ||||||||||||||||  |    
T  11821363 acaccgaaactagcaccaccaccacctagtatagcccaaaaaagatcttcacccattgatttcctattcaaaagcctacccttaacatcaacaatttcag 11821264  T
Q  197 catcaattatattatcaacagaaagaccaaattttctcattaaattaccataaccaccacctgaaaaatgaccaccagtagctactgtaggacacacccc 296  Q
    ||||||| |||||||||||||| | |||| |||||| ||  |   ||||||| || |||||    ||||||||||||  | | || || |||||||| ||    
T  11821263 catcaataatattatcaacagataaaccatattttcgcaacattgtaccataccctccaccactgaaatgaccaccaacaccgacagttggacacacacc 11821164  T
Q  297 agctggaaaagcatgaacttgactcttct 325  Q
    ||| |||||| ||||||| | ||||||||    
T  11821163 agcaggaaaaccatgaaccttactcttct 11821135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 112 - 167
Target Start/End: Complemental strand, 11917705 - 11917650
Alignment:
Q  112 ccaccaccaccccttatagcccaaaaaagatcttctcccattgattttctatcaag 167  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  11917705 ccaccaccacctcttatagcccaaaaaagatcttctcccattgattttctatcaag 11917650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 233
Target Start/End: Original strand, 11803587 - 11803705
Alignment:
Q  115 ccaccaccccttatagcccaaaaaagatcttctcccattgattttctatcaagaatattaccattaacatcaacaatttttgcatcaattatattatcaa 214  Q
    ||||| || |||||||||||||| ||||| || |||||  |||||||||  || || || ||||||||||| || ||||  |||||||||| |||||||     
T  11803587 ccacctcctcttatagcccaaaatagatcctcacccatcaattttctatttaggatctttccattaacatctaccatttgagcatcaattacattatcag 11803686  T
Q  215 cagaaagaccaaattttct 233  Q
    | | ||||||| |||||||    
T  11803687 ctgcaagaccatattttct 11803705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 64 - 173
Target Start/End: Original strand, 11786986 - 11787095
Alignment:
Q  64 acagaaacaagtttaatcttccatttaagaatgacaccaaaacttgcaccaccaccaccccttatagcccaaaaaagatcttctcccattgattttctat 163  Q
    |||| ||||||||| ||||||||   |||||  | |||||||||| |||| |||||||| || ||||||||||| |  || || ||||| ||||||||||    
T  11786986 acaggaacaagttttatcttccaccaaagaagaataccaaaacttccacctccaccacctctaatagcccaaaagaattcctcccccatagattttctat 11787085  T
Q  164 caagaatatt 173  Q
    | ||||||||    
T  11787086 cgagaatatt 11787095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 163
Target Start/End: Complemental strand, 35539005 - 35538966
Alignment:
Q  124 cttatagcccaaaaaagatcttctcccattgattttctat 163  Q
    ||||| |||||||||| |||||||||||||||||||||||    
T  35539005 cttatggcccaaaaaatatcttctcccattgattttctat 35538966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 2152535 - 2152477
Alignment:
Q  127 atagcccaaaaaagatcttctcccattgattttctatcaagaatattaccattaacatc 185  Q
    ||||||||||||| |||||||||||||||||||||||||||||| || ||||| |||||    
T  2152535 atagcccaaaaaacatcttctcccattgattttctatcaagaattttcccatttacatc 2152477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 2176194 - 2176136
Alignment:
Q  127 atagcccaaaaaagatcttctcccattgattttctatcaagaatattaccattaacatc 185  Q
    ||||||||||||| |||||||||||||||||||||||||||||| || ||||| |||||    
T  2176194 atagcccaaaaaacatcttctcccattgattttctatcaagaattttcccatttacatc 2176136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 79 - 170
Target Start/End: Complemental strand, 2196782 - 2196691
Alignment:
Q  79 atcttccatttaagaatgacaccaaaacttgcaccaccaccaccccttatagcccaaaaaagatcttctcccattgattttctatcaagaat 170  Q
    |||||||||  ||||||||| |||||||| | | ||| ||| || || || |||||||||| ||||||||||||||||||||||| ||||||    
T  2196782 atcttccatgcaagaatgactccaaaactagaagcactacctcctctaatggcccaaaaaacatcttctcccattgattttctattaagaat 2196691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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