View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2652_high_1 (Length: 943)

Name: NF2652_high_1
Description: NF2652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2652_high_1
NF2652_high_1
[»] chr8 (12 HSPs)
chr8 (1-393)||(10598780-10599200)
chr8 (459-664)||(40462337-40462532)
chr8 (608-652)||(9755878-9755922)
chr8 (392-445)||(14099743-14099796)
chr8 (513-554)||(26521893-26521934)
chr8 (483-554)||(9755775-9755846)
chr8 (393-447)||(3917795-3917849)
chr8 (391-445)||(38980160-38980214)
chr8 (391-445)||(39011257-39011311)
chr8 (459-499)||(14101036-14101076)
chr8 (579-633)||(34314995-34315048)
chr8 (513-546)||(34315071-34315104)
[»] chr4 (17 HSPs)
chr4 (459-667)||(47863461-47863668)
chr4 (578-664)||(5169489-5169574)
chr4 (483-652)||(56083445-56083604)
chr4 (483-554)||(12862605-12862676)
chr4 (483-554)||(6658647-6658718)
chr4 (397-546)||(47861936-47862086)
chr4 (393-450)||(16314198-16314256)
chr4 (394-447)||(17288631-17288685)
chr4 (578-652)||(51569923-51569996)
chr4 (513-554)||(16312768-16312809)
chr4 (395-448)||(56083355-56083408)
chr4 (459-499)||(6210672-6210712)
chr4 (388-447)||(23506383-23506443)
chr4 (459-553)||(47376598-47376693)
chr4 (391-440)||(6212504-6212553)
chr4 (392-445)||(12861410-12861463)
chr4 (391-447)||(23504892-23504949)
[»] chr3 (13 HSPs)
chr3 (460-652)||(11151397-11151579)
chr3 (578-664)||(39606429-39606514)
chr3 (578-664)||(54673439-54673524)
chr3 (573-664)||(48538031-48538122)
chr3 (393-450)||(36438770-36438828)
chr3 (391-445)||(48537849-48537902)
chr3 (516-552)||(34825709-34825745)
chr3 (514-554)||(36437336-36437376)
chr3 (393-448)||(48165505-48165560)
chr3 (483-546)||(54672720-54672782)
chr3 (392-448)||(15439678-15439735)
chr3 (392-441)||(52042113-52042162)
chr3 (587-652)||(52092696-52092761)
[»] chr1 (17 HSPs)
chr1 (462-652)||(24304114-24304294)
chr1 (578-664)||(13970788-13970874)
chr1 (483-554)||(51676228-51676299)
chr1 (608-652)||(51676149-51676193)
chr1 (578-652)||(35712624-35712697)
chr1 (393-448)||(43403296-43403352)
chr1 (392-444)||(48030240-48030292)
chr1 (471-546)||(9010958-9011032)
chr1 (459-546)||(17242004-17242090)
chr1 (459-546)||(24302999-24303085)
chr1 (392-448)||(21747941-21747998)
chr1 (513-554)||(35712574-35712615)
chr1 (392-445)||(43402261-43402314)
chr1 (459-499)||(21749235-21749275)
chr1 (394-445)||(9008761-9008812)
chr1 (395-445)||(49383023-49383073)
chr1 (391-448)||(51676335-51676392)
[»] scaffold0262 (1 HSPs)
scaffold0262 (393-664)||(2759-3018)
[»] chr5 (4 HSPs)
chr5 (483-554)||(27491167-27491238)
chr5 (393-447)||(29875946-29876000)
chr5 (392-445)||(27490097-27490151)
chr5 (393-435)||(27491287-27491329)
[»] chr6 (7 HSPs)
chr6 (587-652)||(12605065-12605129)
chr6 (393-448)||(12603936-12603991)
chr6 (582-652)||(21511668-21511738)
chr6 (587-661)||(25482333-25482406)
chr6 (396-448)||(26545868-26545920)
chr6 (391-446)||(32146093-32146149)
chr6 (393-448)||(25483399-25483454)
[»] scaffold0049 (2 HSPs)
scaffold0049 (393-445)||(3925-3977)
scaffold0049 (394-447)||(386-440)
[»] chr7 (5 HSPs)
chr7 (459-546)||(5737244-5737330)
chr7 (394-448)||(19628181-19628235)
chr7 (520-554)||(47578501-47578535)
chr7 (392-448)||(12628031-12628088)
chr7 (579-652)||(23526571-23526644)
[»] chr2 (1 HSPs)
chr2 (513-546)||(29043522-29043555)
[»] scaffold0408 (1 HSPs)
scaffold0408 (392-444)||(10085-10136)
[»] scaffold0484 (1 HSPs)
scaffold0484 (392-445)||(11534-11587)
[»] scaffold0071 (1 HSPs)
scaffold0071 (392-448)||(22456-22513)
[»] scaffold0061 (1 HSPs)
scaffold0061 (484-541)||(9880-9936)


Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-173; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-173
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 10598780 - 10599200
Alignment:
Q  1 tgggagagtaaaagatttggagaagaaactagccaaaactaaaaggagtaagaaagtgaggacaaagagacataaaccagtaactcccaaaatgtcttgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10598780 tgggagagtaaaagatttggagaagaaactagccaaaactaaaaggagtaagaaagtgaggacaaagagacataaaccagtaactcccaaaatgtcttgg 10598879  T
Q  101 tcaatgtcttgttcaaactcttctgagtaatcatgtgaatgtggattttgtatgtaatggcggcatggtatgagtcttgttgtattgataatgatgtata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10598880 tcaatgtcttgttcaaactcttctgagtaatcatgtgaatgtggattttgtatgtaatggcggcatggtatgagtcttgttgtattgataatgatgtata 10598979  T
Q  201 attgtaatatttgtggtatgaataaatgaatgttagttttattgctataa--ataatttagagatcggttaaggaaaag-aaagtgatcgtgatcagtaa 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||| || ||||||||||||||||||||    
T  10598980 attgtaatatttgtggtatgaataaatgaatgttagttttattgctataaatataatttagagaacggttaaggaatagtaaagtgatcgtgatcagtaa 10599079  T
Q  298 gtagtcaat--------------------acaaataggaattgcaaatgattaggtcttttgcatctcttcttcttcacaacctg-----tatgttcaaa 372  Q
    |||||||||                    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||    
T  10599080 gtagtcaatagcaaataaattgttttgacacaaataggaattgcaaatgattaggtcttttgcatctcttcttcttcacaacctgataattatgttcaaa 10599179  T
Q  373 aatcacaattgtttgtttata 393  Q
    |||||||||||||||||||||    
T  10599180 aatcacaattgtttgtttata 10599200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 459 - 664
Target Start/End: Original strand, 40462337 - 40462532
Alignment:
Q  459 cttggagattctccctcgccattagaagattctttgattttcaaccctcagacaatctgactggattaatgagctgatgtggcacgctaactgtgtgatg 558  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||  |||    
T  40462337 cttggagattcccccttgccattagaagattctttgattttcaaccctgaggcaatctgactggattaatgagctgatgtggcacgctgactgtgcaatg 40462436  T
Q  559 atgtggcacgctcactgatgtggcactaacacgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatactcctga 658  Q
    |||          | ||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||| ||| |    
T  40462437 atg----------agtgaagtggcactgacacatcataatttttaaatcttttatttttaaaagtatgttaaaaatctgaaacccccaaaatacccctaa 40462526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 608 - 652
Target Start/End: Original strand, 9755878 - 9755922
Alignment:
Q  608 ttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatac 652  Q
    ||||||||||||||||||||||||||||||||||||| |||||||    
T  9755878 ttttatttttaaaagtatgttaaaaatgtgaaataccaaaaatac 9755922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 392 - 445
Target Start/End: Original strand, 14099743 - 14099796
Alignment:
Q  392 tagggttaataggcttttacctcctgtcatttgggggacttttgatttaccccc 445  Q
    ||||||||||||||||||||| |||| |||||||||| |||||| |||||||||    
T  14099743 tagggttaataggcttttaccccctgccatttgggggtcttttggtttaccccc 14099796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 513 - 554
Target Start/End: Complemental strand, 26521934 - 26521893
Alignment:
Q  513 atctgactggattaatgagctgatgtggcacgctaactgtgt 554  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  26521934 atctgactggattaatgagctgatgtggcacgctgactgtgt 26521893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 483 - 554
Target Start/End: Original strand, 9755775 - 9755846
Alignment:
Q  483 gaagattctttgattttcaaccctcagacaatctgactggattaatgagctgatgtggcacgctaactgtgt 554  Q
    ||||||| |||||||||||||||| |    ||||||||||||||||||| |||||| ||||||| |||||||    
T  9755775 gaagattatttgattttcaaccctaatgtcatctgactggattaatgagttgatgtagcacgctgactgtgt 9755846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 393 - 447
Target Start/End: Original strand, 3917795 - 3917849
Alignment:
Q  393 agggttaataggcttttacctcctgtcatttgggggacttttgatttacccccct 447  Q
    |||||||||||||||||||| |||| |||||||| ||| |||| |||||||||||    
T  3917795 agggttaataggcttttaccccctgccatttgggcgacatttggtttacccccct 3917849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 391 - 445
Target Start/End: Complemental strand, 38980214 - 38980160
Alignment:
Q  391 atagggttaataggcttttacctcctgtcatttgggggacttttgatttaccccc 445  Q
    |||||||||||||| ||||||| ||||||||||||| | |||||| |||||||||    
T  38980214 atagggttaataggtttttaccccctgtcatttgggagtcttttggtttaccccc 38980160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 391 - 445
Target Start/End: Complemental strand, 39011311 - 39011257
Alignment:
Q  391 atagggttaataggcttttacctcctgtcatttgggggacttttgatttaccccc 445  Q
    |||||||||||||| ||||||| ||||||||||||| | |||||| |||||||||    
T  39011311 atagggttaataggtttttaccccctgtcatttgggagtcttttggtttaccccc 39011257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 459 - 499
Target Start/End: Complemental strand, 14101076 - 14101036
Alignment:
Q  459 cttggagattctccctcgccattagaagattctttgatttt 499  Q
    ||||||||||| |||| ||||||||||||||||||||||||    
T  14101076 cttggagattcccccttgccattagaagattctttgatttt 14101036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 579 - 633
Target Start/End: Complemental strand, 34315048 - 34314995
Alignment:
Q  579 tggcactaacacgtcataatttttaaatcttttatttttaaaagtatgttaaaaa 633  Q
    |||| ||||||||||||||||||| | | |||||||||||||| |||||||||||    
T  34315048 tggccctaacacgtcataattttttatt-ttttatttttaaaattatgttaaaaa 34314995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 513 - 546
Target Start/End: Complemental strand, 34315104 - 34315071
Alignment:
Q  513 atctgactggattaatgagctgatgtggcacgct 546  Q
    |||||||||||||||| |||||||||||||||||    
T  34315104 atctgactggattaataagctgatgtggcacgct 34315071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 173; Significance: 2e-92; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 173; E-Value: 2e-92
Query Start/End: Original strand, 459 - 667
Target Start/End: Complemental strand, 47863668 - 47863461
Alignment:
Q  459 cttggagattctccctcgccattagaagattctttgattttcaaccctcagacaatctgactggattaatgagctgatgtggcacgctaactgtgtgatg 558  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  47863668 cttggagattccccctcgtcattagaagattctttgattttcaaccctcaggcaatctgactggattaatgagctgatgtggcacgctaactgtgtgatg 47863569  T
Q  559 atgtggcacgctcactgatgtggcactaacacgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatactcctga 658  Q
    |||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |    
T  47863568 atgtggcacgctgactgatgtggcactgacacgtcataa-ttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatacccctta 47863470  T
Q  659 tgataagtt 667  Q
    |||||||||    
T  47863469 tgataagtt 47863461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 578 - 664
Target Start/End: Original strand, 5169489 - 5169574
Alignment:
Q  578 gtggcactaacacgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatactcctgatgataa 664  Q
    |||||||| |||||||||||||||||  | |||||||||||||| |||||||||||||||||||||| ||||||| ||| |||||||    
T  5169489 gtggcactgacacgtcataatttttattt-ttttatttttaaaattatgttaaaaatgtgaaatacctaaaatacccctaatgataa 5169574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 483 - 652
Target Start/End: Original strand, 56083445 - 56083604
Alignment:
Q  483 gaagattctttgattttcaaccctcagacaatctgactggattaatgagctgatgtggcacgctaactgtgtgatgatgtggcacgctcactgatgtggc 582  Q
    ||||||||||||||||||||| || |  | ||||||||||||||||||| |||||||||||||| |||||||  |||||          | ||| |||||    
T  56083445 gaagattctttgattttcaactctgatgccatctgactggattaatgagttgatgtggcacgctgactgtgtagtgatg----------agtgaagtggc 56083534  T
Q  583 actaacacgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatac 652  Q
    | | |||  ||||| ||| || || |||| |||||||||||||||||||||||||||||||| |||||||    
T  56083535 attgacatatcatattttatatattttttttttttaaaagtatgttaaaaatgtgaaataccaaaaatac 56083604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 483 - 554
Target Start/End: Complemental strand, 12862676 - 12862605
Alignment:
Q  483 gaagattctttgattttcaaccctcagacaatctgactggattaatgagctgatgtggcacgctaactgtgt 554  Q
    |||||||||||||||||||||||| |    |||||||||||||||||||||||||||||||||| |||||||    
T  12862676 gaagattctttgattttcaaccctgatgtcatctgactggattaatgagctgatgtggcacgctgactgtgt 12862605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 483 - 554
Target Start/End: Complemental strand, 6658718 - 6658647
Alignment:
Q  483 gaagattctttgattttcaaccctcagacaatctgactggattaatgagctgatgtggcacgctaactgtgt 554  Q
    |||||||||||||||||||||||  |    |||||||||||||||||||||||||||||||||| |||||||    
T  6658718 gaagattctttgattttcaacccggatgtcatctgactggattaatgagctgatgtggcacgctgactgtgt 6658647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 397 - 546
Target Start/End: Original strand, 47861936 - 47862086
Alignment:
Q  397 ttaataggcttttacctcctgtcatttgggggacttttgatttacccccctac--gnnnnnnnncttggagattctccctcgccattagaagattctttg 494  Q
    |||||||||||||||| |||| |||||||||| |||||| |||||||||||||  |        ||||||||| | |||| |||||||||||||||||||    
T  47861936 ttaataggcttttaccccctgccatttgggggtcttttggtttacccccctacgagaaaaaaaacttggagatccccccttgccattagaagattctttg 47862035  T
Q  495 attttcaaccctcagacaatctgactggattaatgagctgatgtggcacgct 546  Q
     ||| | |||  || || |||||| |||||||||| | |||| |||||||||    
T  47862036 gtttac-acctccaaaccatctgattggattaatgtggtgatttggcacgct 47862086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 393 - 450
Target Start/End: Complemental strand, 16314256 - 16314198
Alignment:
Q  393 agggttaataggcttttacctcc-tgtcatttgggggacttttgatttacccccctacg 450  Q
    |||||||||||||||||||| || || |||||||||| |||||| ||||||||||||||    
T  16314256 agggttaataggcttttacccccctgccatttgggggtcttttggtttacccccctacg 16314198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 394 - 447
Target Start/End: Original strand, 17288631 - 17288685
Alignment:
Q  394 gggttaataggcttttacctcc-tgtcatttgggggacttttgatttacccccct 447  Q
    ||||||||||||||||||| || || ||||||||||||||||| |||||||||||    
T  17288631 gggttaataggcttttacccccctgccatttgggggacttttggtttacccccct 17288685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 578 - 652
Target Start/End: Complemental strand, 51569996 - 51569923
Alignment:
Q  578 gtggcactaacacgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatac 652  Q
    |||||||| |||||||||||||||||||| ||| ||||||||||| |||||   || |||||||||||| |||||    
T  51569996 gtggcactgacacgtcataatttttaaat-tttaatttttaaaagaatgtttggaaagtgaaatacccagaatac 51569923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 513 - 554
Target Start/End: Original strand, 16312768 - 16312809
Alignment:
Q  513 atctgactggattaatgagctgatgtggcacgctaactgtgt 554  Q
    ||||||||||||||||||| |||||||||||||| |||||||    
T  16312768 atctgactggattaatgagatgatgtggcacgctgactgtgt 16312809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 395 - 448
Target Start/End: Original strand, 56083355 - 56083408
Alignment:
Q  395 ggttaataggcttttacctcctgtcatttgggggacttttgatttaccccccta 448  Q
    |||||||||||||||||| |||| |||||||||| |||||| | ||||||||||    
T  56083355 ggttaataggcttttaccccctgccatttgggggtcttttggtataccccccta 56083408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 459 - 499
Target Start/End: Original strand, 6210672 - 6210712
Alignment:
Q  459 cttggagattctccctcgccattagaagattctttgatttt 499  Q
    ||||||||||| |||| ||||||||||||||||||||||||    
T  6210672 cttggagattcccccttgccattagaagattctttgatttt 6210712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 388 - 447
Target Start/End: Complemental strand, 23506443 - 23506383
Alignment:
Q  388 tttatagggttaataggcttttacctcc-tgtcatttgggggacttttgatttacccccct 447  Q
    ||||| ||||||||||||||||||| || || |||||||||| |||||| |||||||||||    
T  23506443 tttattgggttaataggcttttacccccctgccatttgggggtcttttggtttacccccct 23506383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 459 - 553
Target Start/End: Original strand, 47376598 - 47376693
Alignment:
Q  459 cttggagattctccctc-gccattagaagattctttgattttcaaccctcagacaatctgactggattaatgagctgatgtggcacgctaactgtg 553  Q
    ||||||||||| ||| | ||||||||||||||||||| |||| |||||| | |  || ||||||||  ||| |||| |||||||||||| ||||||    
T  47376598 cttggagattccccccctgccattagaagattctttggttttgaaccctgatagcatgtgactggacaaattagcttatgtggcacgcttactgtg 47376693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 440
Target Start/End: Complemental strand, 6212553 - 6212504
Alignment:
Q  391 atagggttaataggcttttacctcctgtcatttgggggacttttgattta 440  Q
    ||||| |||||||| ||||||| ||||||||||||||| |||||| ||||    
T  6212553 ataggtttaataggtttttaccccctgtcatttgggggtcttttggttta 6212504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 392 - 445
Target Start/End: Original strand, 12861410 - 12861463
Alignment:
Q  392 tagggttaataggcttttacctcctgtcatttgggggacttttgatttaccccc 445  Q
    ||||||||||||||||||||| ||||  |||||||||  ||||| |||||||||    
T  12861410 tagggttaataggcttttaccccctgctatttgggggtgttttggtttaccccc 12861463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 447
Target Start/End: Original strand, 23504892 - 23504949
Alignment:
Q  391 atagggttaataggctttta-cctcctgtcatttgggggacttttgatttacccccct 447  Q
    |||||||||||||||||||| || |||| |||||||||| |||||  |||||||||||    
T  23504892 atagggttaataggcttttacccccctgccatttgggggtctttttgtttacccccct 23504949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 122; Significance: 4e-62; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 460 - 652
Target Start/End: Complemental strand, 11151579 - 11151397
Alignment:
Q  460 ttggagattctccctcgccattagaagattctttgattttcaaccctcagacaatctgactggattaatgagctgatgtggcacgctaactgtgtgatga 559  Q
    |||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  11151579 ttggagattcccccttgccatgagaagattctttgattttcaaccctcagacaatctgactggattcatgagctgatgtggcacgttaactgtgtgatga 11151480  T
Q  560 tgtggcacgctcactgatgtggcactaacacgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatac 652  Q
    ||          | ||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11151479 tg----------agtgaagtggcactgacacgtcataattttttaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatac 11151397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 578 - 664
Target Start/End: Complemental strand, 39606514 - 39606429
Alignment:
Q  578 gtggcactaacacgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatactcctgatgataa 664  Q
    |||||||| |||||||||| ||||||  | |||||||||||||| |||||||||||||||||||||| ||||||| ||| |||||||    
T  39606514 gtggcactgacacgtcatattttttattt-ttttatttttaaaattatgttaaaaatgtgaaatacctaaaatacccctaatgataa 39606429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 578 - 664
Target Start/End: Complemental strand, 54673524 - 54673439
Alignment:
Q  578 gtggcactaacacgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatactcctgatgataa 664  Q
    |||||||| |||| ||||||||||| | | |||||||||||||| |||||||||||||||||||||| ||||||| ||| |||||||    
T  54673524 gtggcactgacacatcataattttttatt-ttttatttttaaaattatgttaaaaatgtgaaatacctaaaatacccctaatgataa 54673439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 573 - 664
Target Start/End: Original strand, 48538031 - 48538122
Alignment:
Q  573 ctgatgtggcactaacacgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatactcctgatgataa 664  Q
    |||| |||||||| |||||||| | |||||  |  |||||||||||||| |||||| ||||||||||||||| || |||| ||| |||||||    
T  48538031 ctgaagtggcactgacacgtcaaattttttttaatttttatttttaaaattatgttgaaaatgtgaaatacctaatatacccctaatgataa 48538122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 393 - 450
Target Start/End: Complemental strand, 36438828 - 36438770
Alignment:
Q  393 agggttaataggcttttacctcc-tgtcatttgggggacttttgatttacccccctacg 450  Q
    |||||||||||||||||||| || || |||||||||| |||||| ||||||||||||||    
T  36438828 agggttaataggcttttacccccctgccatttgggggtcttttggtttacccccctacg 36438770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 391 - 445
Target Start/End: Original strand, 48537849 - 48537902
Alignment:
Q  391 atagggttaataggcttttacctcctgtcatttgggggacttttgatttaccccc 445  Q
    |||||||||||||||||||||| |||| |||||||||| |||||| |||||||||    
T  48537849 atagggttaataggcttttacc-cctgccatttgggggtcttttggtttaccccc 48537902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 516 - 552
Target Start/End: Original strand, 34825709 - 34825745
Alignment:
Q  516 tgactggattaatgagctgatgtggcacgctaactgt 552  Q
    ||||||||||||||||||||||||||||||| |||||    
T  34825709 tgactggattaatgagctgatgtggcacgctgactgt 34825745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 514 - 554
Target Start/End: Original strand, 36437336 - 36437376
Alignment:
Q  514 tctgactggattaatgagctgatgtggcacgctaactgtgt 554  Q
    |||||||||||||||||| |||||||||||||| |||||||    
T  36437336 tctgactggattaatgagatgatgtggcacgctgactgtgt 36437376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 393 - 448
Target Start/End: Original strand, 48165505 - 48165560
Alignment:
Q  393 agggttaataggcttttacctcctgtcatttgggggacttttgatttaccccccta 448  Q
    ||||||||||| ||||||| ||||| ||||||| || |||||| ||||||||||||    
T  48165505 agggttaatagacttttacttcctgccatttggaggtcttttggtttaccccccta 48165560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 483 - 546
Target Start/End: Original strand, 54672720 - 54672782
Alignment:
Q  483 gaagattctttgattttcaaccctcagacaatctgactggattaatgagctgatgtggcacgct 546  Q
    |||||||||||||||| || |||||| || || |||||||||||||| | ||||||||||||||    
T  54672720 gaagattctttgatttaca-ccctcaaaccatatgactggattaatgggatgatgtggcacgct 54672782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 392 - 448
Target Start/End: Complemental strand, 15439735 - 15439678
Alignment:
Q  392 tagggttaataggcttttacctcct-gtcatttgggggacttttgatttaccccccta 448  Q
    ||||||||||||||||||||| ||  | |||||||||| |||||| ||||||||||||    
T  15439735 tagggttaataggcttttacccccccgccatttgggggtcttttggtttaccccccta 15439678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 392 - 441
Target Start/End: Original strand, 52042113 - 52042162
Alignment:
Q  392 tagggttaataggcttttacctcctgtcatttgggggacttttgatttac 441  Q
    ||||||||||||||||||||| |||||||| |||| | |||||| |||||    
T  52042113 tagggttaataggcttttaccccctgtcatatgggtgtcttttggtttac 52042162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 587 - 652
Target Start/End: Complemental strand, 52092761 - 52092696
Alignment:
Q  587 acacgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatac 652  Q
    ||||||||||||||||  || ||||||||||||||| |||||   || |||||||||| |||||||    
T  52092761 acacgtcataatttttttattttttatttttaaaagaatgtttggaaagtgaaatacctaaaatac 52092696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 4e-56; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 462 - 652
Target Start/End: Complemental strand, 24304294 - 24304114
Alignment:
Q  462 ggagattctccctcgccattagaagattctttgattttcaaccctcagacaatctgactggattaatgagctgatgtggcacgctaactgtgtgatgatg 561  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||  |||||||||||||| ||||||||||||||    
T  24304294 ggagatttcccctcgccattagaagattctttgattttcaaccctcaggcaatctgattggattaatgaattgatgtggcacgctgactgtgtgatgatg 24304195  T
Q  562 tggcacgctcactgatgtggcactaacacgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatac 652  Q
              | ||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24304194 ----------agtgaagtggcactgacacgtcataattttttaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatac 24304114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 578 - 664
Target Start/End: Complemental strand, 13970874 - 13970788
Alignment:
Q  578 gtggcactaacacgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatactcctgatgataa 664  Q
    |||||||  ||||||||||||||||  || ||||||| |||||| |||||||||||||||||||||| ||||||| ||| |||||||    
T  13970874 gtggcaccgacacgtcataatttttttattttttattgttaaaattatgttaaaaatgtgaaatacctaaaatacccctaatgataa 13970788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 483 - 554
Target Start/End: Complemental strand, 51676299 - 51676228
Alignment:
Q  483 gaagattctttgattttcaaccctcagacaatctgactggattaatgagctgatgtggcacgctaactgtgt 554  Q
    |||||||||||||||||||||||| |  | ||||||||||||||||||  |||||||||||||| |||||||    
T  51676299 gaagattctttgattttcaaccctgatgccatctgactggattaatgaattgatgtggcacgctgactgtgt 51676228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 608 - 652
Target Start/End: Complemental strand, 51676193 - 51676149
Alignment:
Q  608 ttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatac 652  Q
    ||||||||||||||||||||||||||||||||||||| |||||||    
T  51676193 ttttatttttaaaagtatgttaaaaatgtgaaatacctaaaatac 51676149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 578 - 652
Target Start/End: Original strand, 35712624 - 35712697
Alignment:
Q  578 gtggcactaacacgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatac 652  Q
    |||||||| |||||||||||||||| | | |||||||||||||| |||||||||||  ||||||||| |||||||    
T  35712624 gtggcactgacacgtcataattttttatt-ttttatttttaaaattatgttaaaaagatgaaatacctaaaatac 35712697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 393 - 448
Target Start/End: Complemental strand, 43403352 - 43403296
Alignment:
Q  393 agggttaataggctttta-cctcctgtcatttgggggacttttgatttaccccccta 448  Q
    |||||||||||||||||| || ||||||||||||||| |||||| ||||||||||||    
T  43403352 agggttaataggcttttatccccctgtcatttgggggtcttttggtttaccccccta 43403296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 392 - 444
Target Start/End: Complemental strand, 48030292 - 48030240
Alignment:
Q  392 tagggttaataggcttttacctcctgtcatttgggggacttttgatttacccc 444  Q
    ||||||||||||||||||||| |||| |||||||||| |||||||| ||||||    
T  48030292 tagggttaataggcttttaccccctgccatttgggggtcttttgatatacccc 48030240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 471 - 546
Target Start/End: Complemental strand, 9011032 - 9010958
Alignment:
Q  471 ccctcgccattagaagattctttgattttcaaccctcagacaatctgactggattaatgagctgatgtggcacgct 546  Q
    |||| ||||||||||||||||||| ||| || ||| || || ||||||||||||||||| | ||||||||||||||    
T  9011032 cccttgccattagaagattctttggtttacacccc-caaaccatctgactggattaatgtgatgatgtggcacgct 9010958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 459 - 546
Target Start/End: Complemental strand, 17242090 - 17242004
Alignment:
Q  459 cttggagattctccctcgccattagaagattctttgattttcaaccctcagacaatctgactggattaatgagctgatgtggcacgct 546  Q
    |||| |||||| |||| ||||||||||||||||||| ||| | |||| || || |||||||| |||||||| | ||||||||||||||    
T  17242090 cttgtagattcccccttgccattagaagattctttggtttac-acccccaaaccatctgactagattaatgtgatgatgtggcacgct 17242004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 459 - 546
Target Start/End: Original strand, 24302999 - 24303085
Alignment:
Q  459 cttggagattctccctcgccattagaagattctttgattttcaaccctcagacaatctgactggattaatgagctgatgtggcacgct 546  Q
    ||||||||||| |||| || |||||||||||||||||||| | |||||||  | |||||| |||||||||| | |||| |||||||||    
T  24302999 cttggagattcccccttgcaattagaagattctttgatttac-accctcaagccatctgaatggattaatgtgatgatttggcacgct 24303085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 392 - 448
Target Start/End: Original strand, 21747941 - 21747998
Alignment:
Q  392 tagggttaataggcttttacctcc-tgtcatttgggggacttttgatttaccccccta 448  Q
    ||||||||||||||||||||| || || |||||||||| |||||| ||||||||||||    
T  21747941 tagggttaataggcttttacccccctgccatttgggggtcttttggtttaccccccta 21747998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 513 - 554
Target Start/End: Original strand, 35712574 - 35712615
Alignment:
Q  513 atctgactggattaatgagctgatgtggcacgctaactgtgt 554  Q
    ||||||||||||||||||||||||||| |||||| |||||||    
T  35712574 atctgactggattaatgagctgatgtgacacgctgactgtgt 35712615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 392 - 445
Target Start/End: Original strand, 43402261 - 43402314
Alignment:
Q  392 tagggttaataggcttttacctcctgtcatttgggggacttttgatttaccccc 445  Q
    |||| |||||||||||||||| |||| |||||||||| |||||| |||||||||    
T  43402261 taggattaataggcttttaccccctgccatttgggggtcttttggtttaccccc 43402314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 459 - 499
Target Start/End: Complemental strand, 21749275 - 21749235
Alignment:
Q  459 cttggagattctccctcgccattagaagattctttgatttt 499  Q
    ||||||||||| |||| ||||||||||||||||||||||||    
T  21749275 cttggagattcccccttgccattagaagattctttgatttt 21749235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 394 - 445
Target Start/End: Original strand, 9008761 - 9008812
Alignment:
Q  394 gggttaataggcttttacctcctgtcatttgggggacttttgatttaccccc 445  Q
    ||||||||||||||||||| |||| |||||||||| |||||| | |||||||    
T  9008761 gggttaataggcttttaccccctgccatttgggggtcttttggtataccccc 9008812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 395 - 445
Target Start/End: Original strand, 49383023 - 49383073
Alignment:
Q  395 ggttaataggcttttacctcctgtcatttgggggacttttgatttaccccc 445  Q
    ||||||||| |||||||| |||| ||||| ||||||||||| |||||||||    
T  49383023 ggttaatagacttttaccccctgccatttaggggacttttggtttaccccc 49383073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 448
Target Start/End: Complemental strand, 51676392 - 51676335
Alignment:
Q  391 atagggttaataggcttttacctcctgtcatttgggggacttttgatttaccccccta 448  Q
    ||||||||||||| |||||||| ||||  ||||||||| |||||| | ||||||||||    
T  51676392 atagggttaatagacttttaccccctgctatttgggggtcttttggtataccccccta 51676335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 106; Significance: 2e-52; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 393 - 664
Target Start/End: Original strand, 2759 - 3018
Alignment:
Q  393 agggttaataggctttta-cctcctgtcatttgggggacttttgatttacccccctacgnnnnnnnncttggagattctccctcgccattagaagattct 491  Q
    ||||||||||| |||||| || |||||||| |||| |||||||| |||||||||||| |        ||||||||||| |||| ||||||||||||||||    
T  2759 agggttaatagacttttatccccctgtcatatgggtgacttttggtttaccccccta-ggaaaaaaacttggagattcccccttgccattagaagattct 2857  T
Q  492 ttgattttcaaccctcagacaatctgactggattaatgagctgatgtggcacgctaactgtgtgatgatgtggcacgctcactgatgtggcactaacacg 591  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||||| ||| |||||| |||||||          | ||| ||||| || |||||    
T  2858 ttgattttcaaccctgaggcaatctgactggattaatgagctgatgtggcatgctgactgtgcgatgatg----------agtgaagtggc-ctgacacg 2946  T
Q  592 tcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatactcctgatgataa 664  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||| ||| |||||||    
T  2947 tcataatttttaaatcttttatttttaaaagtatgttaaaaatctgaaa-ccccaaaatacccctaatgataa 3018  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 483 - 554
Target Start/End: Complemental strand, 27491238 - 27491167
Alignment:
Q  483 gaagattctttgattttcaaccctcagacaatctgactggattaatgagctgatgtggcacgctaactgtgt 554  Q
    |||||||||||| ||| || |||| |  | |||||||||||| |||||||||||||||||||||||||||||    
T  27491238 gaagattctttggtttacacccctgatgccatctgactggatcaatgagctgatgtggcacgctaactgtgt 27491167  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 393 - 447
Target Start/End: Original strand, 29875946 - 29876000
Alignment:
Q  393 agggttaataggcttttacctcctgtcatttgggggacttttgatttacccccct 447  Q
    |||||||||||||||||||| |||| |||||||| ||| |||| |||||||||||    
T  29875946 agggttaataggcttttaccccctgccatttgggcgacatttggtttacccccct 29876000  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 392 - 445
Target Start/End: Original strand, 27490097 - 27490151
Alignment:
Q  392 tagggttaataggcttttacct-cctgtcatttgggggacttttgatttaccccc 445  Q
    |||||||||||||||||||||| |||||||| |||||| |||||| | |||||||    
T  27490097 tagggttaataggcttttacctccctgtcatatgggggtcttttggtataccccc 27490151  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 393 - 435
Target Start/End: Complemental strand, 27491329 - 27491287
Alignment:
Q  393 agggttaataggcttttacctcctgtcatttgggggacttttg 435  Q
    |||||||||||||||||||| ||||  ||||||||||||||||    
T  27491329 agggttaataggcttttaccccctgcaatttgggggacttttg 27491287  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000006; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 587 - 652
Target Start/End: Complemental strand, 12605129 - 12605065
Alignment:
Q  587 acacgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatac 652  Q
    ||||||||||||||||| || |||||||||||||||||| || |||| |||||||||| |||||||    
T  12605129 acacgtcataatttttatattttttatttttaaaagtatatttaaaa-gtgaaatacctaaaatac 12605065  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 393 - 448
Target Start/End: Original strand, 12603936 - 12603991
Alignment:
Q  393 agggttaataggcttttacctcctgtcatttgggggacttttgatttaccccccta 448  Q
    |||||||||||||||||||| |||| |||||||| | |||||| ||||||||||||    
T  12603936 agggttaataggcttttaccccctgccatttgggagtcttttggtttaccccccta 12603991  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 582 - 652
Target Start/End: Original strand, 21511668 - 21511738
Alignment:
Q  582 cactaacacgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatac 652  Q
    |||| |||||||||||| |||  || ||||||||||||||||||||| ||||| | ||||||| |||||||    
T  21511668 cactgacacgtcataatgtttttattttttatttttaaaagtatgtttaaaatataaaatacctaaaatac 21511738  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 587 - 661
Target Start/End: Original strand, 25482333 - 25482406
Alignment:
Q  587 acacgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatactcctgatga 661  Q
    ||||||||||||||||| || |||||||||||||||||| || |||| | |||||||| ||||||| ||| ||||    
T  25482333 acacgtcataatttttatattttttatttttaaaagtatatttaaaa-gagaaatacctaaaatacccctaatga 25482406  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 396 - 448
Target Start/End: Complemental strand, 26545920 - 26545868
Alignment:
Q  396 gttaataggcttttacctcctgtcatttgggggacttttgatttaccccccta 448  Q
    ||||||||||||||||| |||| |||||| ||| |||||| ||||||||||||    
T  26545920 gttaataggcttttaccccctgccatttgagggtcttttggtttaccccccta 26545868  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 391 - 446
Target Start/End: Complemental strand, 32146149 - 32146093
Alignment:
Q  391 atagggttaataggctttta-cctcctgtcatttgggggacttttgatttacccccc 446  Q
    |||||||||||||||||||| || |||| |||||||||| |||||| ||||||||||    
T  32146149 atagggttaataggcttttatccccctgccatttgggggtcttttggtttacccccc 32146093  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 393 - 448
Target Start/End: Complemental strand, 25483454 - 25483399
Alignment:
Q  393 agggttaataggcttttacctcctgtcatttgggggacttttgatttaccccccta 448  Q
    |||||||||||||||||||| |||| |||||||| | ||||||  |||||||||||    
T  25483454 agggttaataggcttttaccccctgccatttgggagtcttttggattaccccccta 25483399  T

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Target: scaffold0049 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 393 - 445
Target Start/End: Complemental strand, 3977 - 3925
Alignment:
Q  393 agggttaataggcttttacctcctgtcatttgggggacttttgatttaccccc 445  Q
    |||||||||||||||||||| |||| ||||||||||||||||| |||| ||||    
T  3977 agggttaataggcttttaccccctgccatttgggggacttttggtttatcccc 3925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 394 - 447
Target Start/End: Original strand, 386 - 440
Alignment:
Q  394 gggttaataggcttttacctcc-tgtcatttgggggacttttgatttacccccct 447  Q
    ||||||||||||||||||| || || ||||||||||||||||| |||||| ||||    
T  386 gggttaataggcttttacccccctgccatttgggggacttttggtttacctccct 440  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000009; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 459 - 546
Target Start/End: Original strand, 5737244 - 5737330
Alignment:
Q  459 cttggagattctccctcgccattagaagattctttgattttcaaccctcagacaatctgactggattaatgagctgatgtggcacgct 546  Q
    |||| |||||| |||| ||||||||||||||||||| ||| | |||| || || |||||||| |||||||| | ||||||||||||||    
T  5737244 cttgtagattcccccttgccattagaagattctttggtttac-acccccaaaccatctgactagattaatgtgatgatgtggcacgct 5737330  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 394 - 448
Target Start/End: Complemental strand, 19628235 - 19628181
Alignment:
Q  394 gggttaataggcttttacctcctgtcatttgggggacttttgatttaccccccta 448  Q
    ||||||||||| ||||||| |||| |||||||| | |||||| ||||||||||||    
T  19628235 gggttaataggtttttaccccctgccatttgggagtcttttggtttaccccccta 19628181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 520 - 554
Target Start/End: Complemental strand, 47578535 - 47578501
Alignment:
Q  520 tggattaatgagctgatgtggcacgctaactgtgt 554  Q
    ||||||||||||||||||||||||||| |||||||    
T  47578535 tggattaatgagctgatgtggcacgctgactgtgt 47578501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 392 - 448
Target Start/End: Original strand, 12628031 - 12628088
Alignment:
Q  392 tagggttaataggctttta-cctcctgtcatttgggggacttttgatttaccccccta 448  Q
    ||||||||||||||||||| || |||| |||||| ||| |||||| ||||||||||||    
T  12628031 tagggttaataggcttttacccccctgccatttgcgggtcttttggtttaccccccta 12628088  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 579 - 652
Target Start/End: Complemental strand, 23526644 - 23526571
Alignment:
Q  579 tggcactaacacgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatac 652  Q
    ||||||| ||||||||| ||||||| || || |||||||  ||  ||| ||||||||||||||||| |||||||    
T  23526644 tggcactgacacgtcattatttttatattttatatttttttaaaaatgctaaaaatgtgaaatacctaaaatac 23526571  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 513 - 546
Target Start/End: Complemental strand, 29043555 - 29043522
Alignment:
Q  513 atctgactggattaatgagctgatgtggcacgct 546  Q
    ||||||||||||||||||||||||||||||||||    
T  29043555 atctgactggattaatgagctgatgtggcacgct 29043522  T

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Target: scaffold0408 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 392 - 444
Target Start/End: Original strand, 10085 - 10136
Alignment:
Q  392 tagggttaataggcttttacctcctgtcatttgggggacttttgatttacccc 444  Q
    ||||||||||||||||||||| |||| |||||||||| |||||| ||||||||    
T  10085 tagggttaataggcttttacc-cctgccatttgggggtcttttggtttacccc 10136  T

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Target: scaffold0484 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 392 - 445
Target Start/End: Original strand, 11534 - 11587
Alignment:
Q  392 tagggttaataggcttttacctcctgtcatttgggggacttttgatttaccccc 445  Q
    ||||||||||||||||||||| |||| |||||||| | ||||||  ||||||||    
T  11534 tagggttaataggcttttaccccctgccatttgggagtcttttggattaccccc 11587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 392 - 448
Target Start/End: Original strand, 22456 - 22513
Alignment:
Q  392 tagggttaataggcttttacctcct-gtcatttgggggacttttgatttaccccccta 448  Q
    ||||||||||||||||||||| ||  | |||||||||| |||||| ||||||||||||    
T  22456 tagggttaataggcttttacccccccgccatttgggggtcttttggtttaccccccta 22513  T

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Target: scaffold0061 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 484 - 541
Target Start/End: Original strand, 9880 - 9936
Alignment:
Q  484 aagattctttgattttcaaccctcagacaatctgactggattaatgagctgatgtggc 541  Q
    ||||||||||||||| |  |||| |||| ||||||||||||||||||| |||||||||    
T  9880 aagattctttgatttacc-ccctaagaccatctgactggattaatgagatgatgtggc 9936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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