View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2652_high_11 (Length: 548)
Name: NF2652_high_11
Description: NF2652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2652_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 13 - 405
Target Start/End: Complemental strand, 27873395 - 27873003
Alignment:
| Q |
13 |
aaaatcattaaaacacaacaaagtacgatgattcaatttccacatagtccataaacaaaaaagtgaaatttcaattcctattaatcattgtgtacacttt |
112 |
Q |
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| T |
27873395 |
aaaatcattaaaacacaacaaagtacgatgattcaatttccacatagtccataaacaaaaaagtgaaatttcaattcctattaatcattgtgtacacttt |
27873296 |
T |
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| Q |
113 |
ttccatcttttattttttaaaacctaagagaaaatttatattttcccgggaaacaaaaggaaaatacctgaaggtcaagacgtttttcccagccattagg |
212 |
Q |
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| T |
27873295 |
ttccatcttttattttttaaaacctaagagaaaatttatattttcccgggaaacaaaaggaaaatacctgaaggtcaagacgtttttcccagccattagg |
27873196 |
T |
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| Q |
213 |
aacctgtaaatcaagatccaattcttgtgattcaattgaagaggacccaccaagcaagtctcttgtaatcagagccgttgatttctcaccatgagaatca |
312 |
Q |
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| T |
27873195 |
aacctgtaaatcaagatccaattcttgggattcaattgaagaggacccaccaagcaagtctcttgtaatcagagccgttgatttctcaccatgagaatca |
27873096 |
T |
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| Q |
313 |
ttgccaaccgttcgatgttgctcatctttgtatccaccaccacctagaaccctaacaagagaactaacttcagtagccattgcttaatttctc |
405 |
Q |
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| T |
27873095 |
ttgccaaccgttcgatgttgctcatctttgtatccaccaccacctagaaccctaacaagagaactaacttcagtagccattgcttaatttctc |
27873003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 476 - 529
Target Start/End: Complemental strand, 27872932 - 27872879
Alignment:
| Q |
476 |
gtctgtgtccttcgtgtgtgtgactgtgagagatttatatatgccaataaagat |
529 |
Q |
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| T |
27872932 |
gtctgtgtccttcgtgtgtgtgactgtgagagatttatatatgccaataaagat |
27872879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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