View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2652_high_13 (Length: 515)
Name: NF2652_high_13
Description: NF2652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2652_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 498
Target Start/End: Original strand, 4097523 - 4098020
Alignment:
| Q |
1 |
caaaagtaattatctgggtaaaagtcacaaccattttctccgagggatcaaagctctatgtcactgctggcatgaagaaaacaaggagtagggaagcata |
100 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4097523 |
caaaagtaattatctgggtaaaagtgacaaccattttctccgagggatcaaagctctatgtgactgctggcatgaagaaaacaaggagtagggaagcata |
4097622 |
T |
|
| Q |
101 |
tgatgtttcaagagatggtgtacctgtagataagttctaaaactttcatatcataatctgtaaaagcctttcttgttttatacaccattttaagtctttt |
200 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4097623 |
tgatgttacaagagatggtgtacctgtagataagttctaaaactttcatatgataatctgtaaaagcctttgttgttttatacaccattttaagtctttt |
4097722 |
T |
|
| Q |
201 |
tgtatggttgggttgtgatttgagaaatgtggaaagtctctttagtatttgatgattatgatcaattaactgttgctgtttggtagtttacatcttcact |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4097723 |
tgtatggttgggttgtgatttgagaaatgtggaaagtctctttagtattcgatgattatgatcaattaactgttgctgtttggtagtttacatcttcact |
4097822 |
T |
|
| Q |
301 |
aatttttcacatttagccaaacccaaaccatgaacatccttgattctagagagtagtaatttctcgtgaaaactgagactctttcgccaaaaccaacgga |
400 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4097823 |
aatttttcacatttagccaaacccaaaccatgaacatccttgattctagagagtagtaatttcatgtgaaaactgagactctttcgccaaaaccaacgga |
4097922 |
T |
|
| Q |
401 |
atacgtcctatctgcagtagctggtctattccatctgttataaatgcacatgtaaaggagatgaaaatatgaattatatatctcgtaatacctgcatt |
498 |
Q |
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||||||| |||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4097923 |
atacgtcttatctgcagtagttgttctattccatctgttataaatgcacatgtcaaggagatgaaaatatgaattatatatctcgtaatacctgcatt |
4098020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 39 - 140
Target Start/End: Complemental strand, 25796629 - 25796528
Alignment:
| Q |
39 |
tccgagggatcaaagctctatgtcactgctggcatgaagaaaacaaggagtagggaagcatatgatgtttcaagagatggtgtacctgtagataagttct |
138 |
Q |
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||||||||| ||||||| | ||||||||||||||||||||||||||| |||||||| ||||| ||||| |||||||||||| | ||||||| |||| |
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| T |
25796629 |
tccgagggaccaaagctgaacttcactgctggcatgaagaaaacaaggaaaagggaagcttatgaagtttctagagatggtgtaattatagataaattct |
25796530 |
T |
|
| Q |
139 |
aa |
140 |
Q |
| |
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|| |
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|
| T |
25796529 |
aa |
25796528 |
T |
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