View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2652_high_14 (Length: 503)
Name: NF2652_high_14
Description: NF2652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2652_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 20 - 493
Target Start/End: Complemental strand, 45317288 - 45316814
Alignment:
| Q |
20 |
aagtgtgatagctgtcctcccacagtttaacaaccacacatcctgtctctagctgggacataaaaattataagcatctgggaagggaacatccttcttgt |
119 |
Q |
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| T |
45317288 |
aagtgtgatagctgtcctcccacagtttaacaaccacacatcctgtctctagctgggacatcaaaattataagcatctgggaagggaacatccttcttgt |
45317189 |
T |
|
| Q |
120 |
tttatgcaacatatggctgccctgaagagcacaagcttcagttatatattccaaaccatttcctgcaagatgttgcaaaggtagacacgtccagttacga |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45317188 |
tttatgcaacatatggctgccctgaagagcacaagcttcagttatatattccaaaccatttcctgcaagatgttgcaaaggtagacacgtccagttacga |
45317089 |
T |
|
| Q |
220 |
ccgtgttggcatttctcatgaacttgatcttggataaaaacatcca-aatttcttgacnnnnnnngcaggtgtcaagcagcataaatggcacatttcact |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| | |
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| T |
45317088 |
ccgtgttggcatttctcatgaacttgatcttggataaaaacatccataatttcttgacaaaaaaagcaggtgtcaagcagcataaatggcacatttcatt |
45316989 |
T |
|
| Q |
319 |
ctccaatagcaactactcaccatgacctcagcttgaatcaacaatgagaattctcaatgcatcaaaatcaaagtattacatccccagcaaatagaaggtc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45316988 |
ctccaatagcaactactcaccatgacctcagcttgaatcaacaatgagaattctcaatgcatcaaaatcaaagtattacatccccagcaaatagaaggtc |
45316889 |
T |
|
| Q |
419 |
gcatatccttccctctgtggaaagattttcctgagaaccaatattagaatttaggttcttctttgctttcctatg |
493 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45316888 |
gcatatccttccctctgtggaaagattttcctgagaaccaatattagaatttaggttcttctttgctttcctatg |
45316814 |
T |
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