View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2652_high_21 (Length: 399)
Name: NF2652_high_21
Description: NF2652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2652_high_21 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 72 - 303
Target Start/End: Complemental strand, 2702068 - 2701837
Alignment:
| Q |
72 |
atatttcagcttttgccagaggaagttggggaagcgttgaaagaagcagctgtgatatctatgggaactgaaattggtgaactagatttggcaaatatca |
171 |
Q |
| |
|
||||||||| ||||| |||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2702068 |
atatttcagattttgacagaggaagttgaagcagagttgaaagaagcagctgtgatatctatgggaactgaaattggtgaactagatttggcaaatatca |
2701969 |
T |
|
| Q |
172 |
aagagctatgtgaccagattttatctctttcggaatatagagctcgactctatgattatctcaagagtaggatgaacaccattgaacccaatttgactgc |
271 |
Q |
| |
|
|||||||||||||||| || | |||||||| ||||| ||||||| |||||||||||||| |||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
2701968 |
gagagctatgtgaccaggttctgtctctttcagaatacagagctcagctctatgattatctaaagagtaggatgaataccattgcacccaatttgactgc |
2701869 |
T |
|
| Q |
272 |
tatgaccggggagcttgttggtgctcgcctca |
303 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |
|
|
| T |
2701868 |
tatggttggggagcttgttggtgctcgcctca |
2701837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 286 - 385
Target Start/End: Complemental strand, 2708535 - 2708436
Alignment:
| Q |
286 |
ttgttggtgctcgcctcactgctcacgaactcgacttgttaaatattacatagttgcctgacagtactatgcagattctttgtgctgaagactaaatatg |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2708535 |
ttgttggtgctcgcctcactgctcacgaactcgacttgttaaatattacatagttgcctgacagtactgtgcagattctttgtgctgaagactaaatatg |
2708436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 74 - 303
Target Start/End: Original strand, 26715327 - 26715556
Alignment:
| Q |
74 |
atttcagcttttgccagaggaagttggggaagcgttgaaagaagcagctgtgatatctatgggaactgaaattggtgaactagatttggcaaatatcaaa |
173 |
Q |
| |
|
||||||| ||||| ||||||| |||| || || | |||| ||||| | |||||||| |||||||||||||||||||| || |||||| ||||||| | | |
|
|
| T |
26715327 |
atttcagattttgtcagaggaggttgaggcagaggtgaaggaagcttcagtgatatcaatgggaactgaaattggtgagcttgatttgtcaaatattaga |
26715426 |
T |
|
| Q |
174 |
gagctatgtgaccagattttatctctttcggaatatagagctcgactctatgattatctcaagagtaggatgaacaccattgaacccaatttgactgcta |
273 |
Q |
| |
|
||||| ||||| ||| |||| ||||| || ||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
26715427 |
gagctctgtgatcaggttttgtctctatcagaatacagagctcaactctatgattatctcaagagtaggatgaacaccattgcacccaatttgactgcta |
26715526 |
T |
|
| Q |
274 |
tgaccggggagcttgttggtgctcgcctca |
303 |
Q |
| |
|
|| |||||||||||||||||||| |||| |
|
|
| T |
26715527 |
tggttggggagcttgttggtgctcgactca |
26715556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University