View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2652_high_26 (Length: 352)
Name: NF2652_high_26
Description: NF2652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2652_high_26 |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 23798879 - 23799025
Alignment:
| Q |
1 |
aattaataaagtggaatttggaatgaaaagaggagcgtggcaaaagagaataatgccaaaatgacacactagtcactaggattctaagctttttcacgtg |
100 |
Q |
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| T |
23798879 |
aattaataaagtggaatttggaatgaaaagaggagcgtggcaaaagagaataatgccaaaatgacacactagtcactaggattctaagctttttcacgtg |
23798978 |
T |
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| Q |
101 |
tatggtggtgccctaacaattcagaatattaatgtaggtcactcata |
147 |
Q |
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| T |
23798979 |
tatggtggtgccctaacaattcagaatattaatgtaggtcactcata |
23799025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 205 - 338
Target Start/End: Original strand, 23799080 - 23799213
Alignment:
| Q |
205 |
tcaattgtcataaatcataataggggaatcgtgtcttgcctaatttaatataggttggcatcagtctaaagtgtaataatagcagcagaacccaattata |
304 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23799080 |
tcaattgtcataaatcacaataggggaatcgtgtcttgcctaatttaatataggttggcatcagtctaaagtgtaataatagcagcagaacccaattata |
23799179 |
T |
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| Q |
305 |
tactgcctgattaaattgctatttatgttcataa |
338 |
Q |
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| T |
23799180 |
tagtgcctgattaaattgctatttatgttcataa |
23799213 |
T |
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