View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2652_high_30 (Length: 342)
Name: NF2652_high_30
Description: NF2652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2652_high_30 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 323
Target Start/End: Complemental strand, 41898569 - 41898263
Alignment:
| Q |
16 |
atgttcccatcactcaaaaatcagaaagaaacttttcaataaactcgttagcttcaagacatcgtaatcctttacattacacattaattaatataaagaa |
115 |
Q |
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| T |
41898569 |
atgttcccatcactcaaaaatcagaaagaaacttttcaataaactcgttagcttcaagacatcgtaatcctttatattacacattaattaatataaagaa |
41898470 |
T |
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| Q |
116 |
tcttcacaattttgattctttaacatgcagaacaaatcactaaccccactnnnnnnngtgaagtttctattgtcccaaacagcaccaaaattattaactc |
215 |
Q |
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| T |
41898469 |
tcttcacaattttgattctttaacatgcagaacaaatcact-accccacttaaaaaagtgaagtttctattgtcccaaacagcaccaaaattattaactt |
41898371 |
T |
|
| Q |
216 |
aattgatgtttcttcatnnnnnnntattcttgttaacaattccacatagagaaatatcaatctatactctacaagtttcctacatctgaaactagacata |
315 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41898370 |
aattgatgtttcttcataaaaaaatattcttgttaacaattccacatagaaaaatatcaatctatactctacaagtttcctacatctgaaactagacata |
41898271 |
T |
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| Q |
316 |
gtttggat |
323 |
Q |
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|||||||| |
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| T |
41898270 |
gtttggat |
41898263 |
T |
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