View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2652_high_32 (Length: 322)
Name: NF2652_high_32
Description: NF2652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2652_high_32 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 17 - 322
Target Start/End: Complemental strand, 47473694 - 47473389
Alignment:
| Q |
17 |
gtggaagagggaaaagttaagtatattggactatctgaagccagccccgatacaataaggagagcgcatgctgttcatcccatcactgctgtacaaatag |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47473694 |
gtggaagagggaaaagttaagtatattggactatctgaagccagccctgatacaataaggagagcgcatgctgttcatcccatcactgctgtacaaatag |
47473595 |
T |
|
| Q |
117 |
agtggtctctttggactcgcgacattgaggaggagatagttcctctctgcaggttagtttgagttcctctccaagttcattggttaagtgttacttgaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47473594 |
agtggtctctttggactcgcgacattgaggaggagatagttcctctctgcaggttagtttgagttcctctccaagttcattggttaagtgttacttgaaa |
47473495 |
T |
|
| Q |
217 |
agagggttaaggaaaaggaaccatttgctcctggttgcttgtttgtgttaaatgtgacttcactaatttaaagcttttgttgatacagagagcttggtat |
316 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47473494 |
agagggttaaggaataggaaccatttgctcctggttgcttgtttgtgttaaatgtgacttcactaatttaaagcttttgttgatacagagagcttggtat |
47473395 |
T |
|
| Q |
317 |
tggaat |
322 |
Q |
| |
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|||||| |
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| T |
47473394 |
tggaat |
47473389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 17 - 322
Target Start/End: Complemental strand, 47486409 - 47486103
Alignment:
| Q |
17 |
gtggaagagggaaaagttaagtatattggactatctgaagccagccccgatacaataaggagagcgcatgctgttcatcccatcactgctgtacaaatag |
116 |
Q |
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|||||||| |||||||| |||||||| || ||||||||||| ||||| |||||||||||||||||||| | ||||||||||||| ||||||||||| | |
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| T |
47486409 |
gtggaagaaggaaaagtgaagtatatagggctatctgaagctagcccagatacaataaggagagcgcacaccattcatcccatcacagctgtacaaatgg |
47486310 |
T |
|
| Q |
117 |
agtggtctctttggactcgcgacattgaggaggagatagttcctctctgcaggttagtttgagttcctctccaagttcattggttaagtgttacttgaaa |
216 |
Q |
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||||||||||||||||||| ||||||||||| ||||||||||| || ||| ||||||||||||||||| ||||||||| ||| |||| ||||||||||| |
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| T |
47486309 |
agtggtctctttggactcgtgacattgaggatgagatagttccactatgccggttagtttgagttcctgtccaagttctttgattaa--gttacttgaaa |
47486212 |
T |
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| Q |
217 |
agagggttaaggaaaaggaaccatttgctcctggttgcttgtttgtgttaaatgt-----gacttcactaatttaaagcttttgttgatacagagagctt |
311 |
Q |
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|||||||||| |||| |||| ||||||| | ||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
47486211 |
agagggttaaagaaatagaactgtttgctctt--ttggatgtttgtgttaaatgttgtactacttcacttatttaaagcttttgttgatacagagagctt |
47486114 |
T |
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| Q |
312 |
ggtattggaat |
322 |
Q |
| |
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||||||||||| |
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| T |
47486113 |
ggtattggaat |
47486103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 17 - 195
Target Start/End: Complemental strand, 47476992 - 47476814
Alignment:
| Q |
17 |
gtggaagagggaaaagttaagtatattggactatctgaagccagccccgatacaataaggagagcgcatgctgttcatcccatcactgctgtacaaatag |
116 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||| ||||||||| |
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| T |
47476992 |
gtggaagagggaaaagttaaatatattggactatctgaagccagccccgatacaataaggagagcacatgctgttcatcctatcacagctttacaaatag |
47476893 |
T |
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| Q |
117 |
agtggtctctttggactcgcgacattgaggaggagatagttcctctctgcaggttagtttgagttcctctccaagttca |
195 |
Q |
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| T |
47476892 |
agtggtctctctggactcgcgacattgagaacgagatagttcctctctgcaggttagtttgagttcctctccaagttca |
47476814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 145
Target Start/End: Complemental strand, 47469359 - 47469234
Alignment:
| Q |
20 |
gaagagggaaaagttaagtatattggactatctgaagccagccccgatacaataaggagagcgcatgctgttcatcccatcactgctgtacaaatagagt |
119 |
Q |
| |
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||||||||||| ||||||| || ||| ||||||| || || | |||||||| || || || ||||||||||||||||| |||||||| ||||| || | |
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| T |
47469359 |
gaagagggaaagattaagtacataggattatctgaggctagtactgatacaatcagaagggcacatgctgttcatcccattactgctgttcaaatggaat |
47469260 |
T |
|
| Q |
120 |
ggtctctttggactcgcgacattgag |
145 |
Q |
| |
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|||||||||||||||| || |||||| |
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| T |
47469259 |
ggtctctttggactcgtgaaattgag |
47469234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 322
Target Start/End: Complemental strand, 47476703 - 47476633
Alignment:
| Q |
251 |
ttgcttgtttgtgttaaatgtgacttcactaatttaaagcttttgttgatacagagagcttggtattggaat |
322 |
Q |
| |
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|||| |||||||||||| || || || ||| |||| ||||||||||||||| |||||||||||||||||||| |
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| T |
47476703 |
ttgcatgtttgtgttaa-tgagattttacttatttcaagcttttgttgatatagagagcttggtattggaat |
47476633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 267 - 312
Target Start/End: Complemental strand, 17386566 - 17386521
Alignment:
| Q |
267 |
aatgtgacttcactaatttaaagcttttgttgatacagagagcttg |
312 |
Q |
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|||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
17386566 |
aatgtgacttcactgatttaaagtttttgttgatacagagagcttg |
17386521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 251 - 307
Target Start/End: Complemental strand, 44903806 - 44903750
Alignment:
| Q |
251 |
ttgcttgtttgtgttaaatgtgacttcactaatttaaagcttttgttgatacagaga |
307 |
Q |
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|||| |||||||||| |||||||||| |||||||||||| |||||||||| |||||| |
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| T |
44903806 |
ttgcatgtttgtgttgaatgtgactttactaatttaaagtttttgttgatgcagaga |
44903750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 312
Target Start/End: Complemental strand, 49091666 - 49091605
Alignment:
| Q |
251 |
ttgcttgtttgtgttaaatgtgacttcactaatttaaagcttttgttgatacagagagcttg |
312 |
Q |
| |
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|||| |||||||||| ||||||| || |||||||||||| |||||||||| |||||| |||| |
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| T |
49091666 |
ttgcatgtttgtgttgaatgtgaatttactaatttaaagtttttgttgatgcagagaacttg |
49091605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 17225908 - 17225952
Alignment:
| Q |
251 |
ttgcttgtttgtgttaaatgtgacttcactaatttaaagcttttg |
295 |
Q |
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|||| |||||||||| |||||| ||||||||||||||||||||| |
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| T |
17225908 |
ttgcgtgtttgtgttgaatgtggtttcactaatttaaagcttttg |
17225952 |
T |
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