View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2652_high_35 (Length: 298)
Name: NF2652_high_35
Description: NF2652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2652_high_35 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 31179917 - 31179636
Alignment:
| Q |
1 |
tattggcttatgagttgtgacat--agtagtatatcctttgaccttatgtattatttagtttgcttgtgaaattggcaaattacttattatttgatttaa |
98 |
Q |
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| T |
31179917 |
tattggcttatgagttgtgacatggagtagtatatcctttgaccttatgtattatttagtttgcttgtgaaattggcaaattacttattatttgatttaa |
31179818 |
T |
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| Q |
99 |
agcacaagggataagaatgagcattttacatcattagaaagaatcatatccatatatgctatcccattcgtagtgttaccacaactatatatgttttgct |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31179817 |
agcacaagggataagaatgagcattttacatcattagaaagaatcatatccatatatgctatcccattcgtagtgttaccacaactatatatgttttgct |
31179718 |
T |
|
| Q |
199 |
ttttccacacagcaaggttccaagcaaccgttcccgtttgcatactccaaaaaattgatgttattatttttcatttagaggg |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31179717 |
ttttccacacagcaaggttccaagcaaccgttcccgtttgcatactccaaaaaattgatgttattatttttcatttagaggg |
31179636 |
T |
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