View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2652_high_48 (Length: 239)
Name: NF2652_high_48
Description: NF2652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2652_high_48 |
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| [»] chr6 (11 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 24356749 - 24356528
Alignment:
| Q |
18 |
attttcaaaatccaaaacacctgaaattctagataagaaagcggaaaataacatgcaagggatttgggaggctacttctatgacaggatatatagtgccc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24356749 |
attttcaaaatccaaaacacctgaaattctagataagaaagcggaaaataacatgcaagggatttgggaggctacttctatgacaggatatatagtgccc |
24356650 |
T |
|
| Q |
118 |
gaggtcccaaaagtggttgctaatgccattccccaagttactacaggttatctagatttttcaaattataagccatctttcaaattactatagtatgtat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24356649 |
gaggtcccaaaagtggttgctaatgccattccccaagttactacaggttatctagatttttcaaattataagccatctttcaaattactatagtatgtat |
24356550 |
T |
|
| Q |
218 |
tactttttccaatatttatccc |
239 |
Q |
| |
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|||||||||| ||||||||||| |
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| T |
24356549 |
tactttttcccatatttatccc |
24356528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 24382667 - 24382503
Alignment:
| Q |
18 |
attttcaaaatccaaaacacctgaaattctagataagaaagcggaaaataacatgcaagggatttgggaggctacttctatgacaggatatatagtgccc |
117 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||| |||||||||| |
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| T |
24382667 |
attttcaaaatccaaaacaccagaaattccagataagaaagcggaaaataacttgcaagggttttgggaggctacttgtatgacaggatctatagtgccc |
24382568 |
T |
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| Q |
118 |
gaggtcccaaaagtggttgctaatgccattccccaagttactacaggttatctagatttttcaaa |
182 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
24382567 |
gaggtcccaaaagtggttgctaatggcattccccaagttactacaggttatctagatttttcaaa |
24382503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 24357217 - 24357053
Alignment:
| Q |
18 |
attttcaaaatccaaaacacctgaaattctagataagaaagcggaaaataacatgcaagggatttgggaggctacttctatgacaggatatatagtgccc |
117 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
24357217 |
attttcaaaatccaaaacaccagaaattccagataagaaagcggaaaataacatggaagggatttgggaggctacttctatgacaggatttatagtgcct |
24357118 |
T |
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| Q |
118 |
gaggtcccaaaagtggttgctaatgccattccccaagttactacaggttatctagatttttcaaa |
182 |
Q |
| |
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||||||||||| ||||||||||||| ||||| |||| |||||||||||||| ||| |||||||| |
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| T |
24357117 |
gaggtcccaaaggtggttgctaatggtattcctcaaggtactacaggttatccagaattttcaaa |
24357053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 24382823 - 24382659
Alignment:
| Q |
18 |
attttcaaaatccaaaacacctgaaattctagataagaaagcggaaaataacatgcaagggatttgggaggctacttctatgacaggatatatagtgccc |
117 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
24382823 |
attttcaaaatccaaaacaccagaaattccagataagaaagcggaaaataacatgcaagggatttgggaggctacttctatgacaggatctatagtgcct |
24382724 |
T |
|
| Q |
118 |
gaggtcccaaaagtggttgctaatgccattccccaagttactacaggttatctagatttttcaaa |
182 |
Q |
| |
|
|||||||||||||| |||||| ||| ||||| |||| |||||||||||||| | | |||||||| |
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| T |
24382723 |
gaggtcccaaaagtagttgctgatggtattcctcaaggtactacaggttatccaaaattttcaaa |
24382659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 24356905 - 24356741
Alignment:
| Q |
18 |
attttcaaaatccaaaacacctgaaattctagataagaaagcggaaaataacatgcaagggatttgggaggctacttctatgacaggatatatagtgccc |
117 |
Q |
| |
|
|||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | |
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| T |
24356905 |
attttcaaaatccaaaccaccagaaattccagataagaaagcggaaaataacatgcaagtgatttgggaggctacttctatgacaggatttatagtgtct |
24356806 |
T |
|
| Q |
118 |
gaggtcccaaaagtggttgctaatgccattccccaagttactacaggttatctagatttttcaaa |
182 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||| ||||| |||||||| ||| |||||||| |
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| T |
24356805 |
gaggtcccaaaagtggttgctaatggtattcctcaaggtactataggttatcaagaattttcaaa |
24356741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 24357061 - 24356897
Alignment:
| Q |
18 |
attttcaaaatccaaaacacctgaaattctagataagaaagcggaaaataacatgcaagggatttgggaggctacttctatgacaggatatatagtgccc |
117 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
24357061 |
attttcaaaatccaaaacaccagaaattccggataagaaagcggaaaataacatgcaagggatttgggaggctacatctatgacaggatttatagtgcct |
24356962 |
T |
|
| Q |
118 |
gaggtcccaaaagtggttgctaatgccattccccaagttactacaggttatctagatttttcaaa |
182 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||| ||||||||||| || ||| |||||||| |
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| T |
24356961 |
gaggtcccaaaagtggttgctaatggtattcctcaaagtactacaggttgtccagaattttcaaa |
24356897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 24357373 - 24357209
Alignment:
| Q |
18 |
attttcaaaatccaaaacacctgaaattctagataagaaagcggaaaataacatgcaagggatttgggaggctacttctatgacaggatatatagtgccc |
117 |
Q |
| |
|
||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
24357373 |
attttcaaaatccaaaacaccagaaattccatataagaaagcggaaaataacatgcaagggatttgggaggctacttctatgacaggatttatggtgcct |
24357274 |
T |
|
| Q |
118 |
gaggtcccaaaagtggttgctaatgccattccccaagttactacaggttatctagatttttcaaa |
182 |
Q |
| |
|
||||||||||| ||||| |||||| ||||| |||| |||||||||||||| ||| |||||||| |
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| T |
24357273 |
gaggtcccaaaggtggtctctaatggtattcctcaaggtactacaggttatccagaattttcaaa |
24357209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 48 - 182
Target Start/End: Complemental strand, 24357499 - 24357365
Alignment:
| Q |
48 |
agataagaaagcggaaaataacatgcaagggatttgggaggctacttctatgacaggatatatagtgcccgaggtcccaaaagtggttgctaatgccatt |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||| |
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| T |
24357499 |
agataagaaagcggaaaataacatgcaagggaattgggaggctacttctatgacaggatttatagtgcctgaggtcccaaaagtggttgctaatggtatt |
24357400 |
T |
|
| Q |
148 |
ccccaagttactacaggttatctagatttttcaaa |
182 |
Q |
| |
|
|| |||| |||||||||||||| ||| |||||||| |
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|
| T |
24357399 |
cctcaaggtactacaggttatccagaattttcaaa |
24357365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 24382976 - 24382815
Alignment:
| Q |
18 |
attttcaaaatccaaaacacctgaaattctagataagaaagcggaaaataacatgcaagggatttgggaggctacttctatgacaggatatatagtgccc |
117 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||| ||||| ||||||||||| |||||||||||||||||||||| |||||||| || ||||| |||| |
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| T |
24382976 |
attttcaaaatccaaaacaccagaaattccagataaaaaagcagaaaataacatacaagggatttgggaggctacttgtatgacagcatctatagagccc |
24382877 |
T |
|
| Q |
118 |
gaggtcccaaaagtggttgctaatgccattccccaagttactacaggttatctagatttttcaaa |
182 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||| ||||||||| ||| |||||||| |
|
|
| T |
24382876 |
gaggtcccaaaagtggtttctaatg---gtccccaagttactgcaggttatccagaattttcaaa |
24382815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 24382068 - 24382013
Alignment:
| Q |
181 |
aattataagccatctttcaaattactatagtatgtattactttttccaatatttat |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
24382068 |
aattataagccatctttcaaattactatagtatgtattactctttcccatatttat |
24382013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 24382510 - 24382388
Alignment:
| Q |
19 |
ttttcaaaatccaaaacacctgaaattctagataagaaagcggaaaataacatgcaagggatttgggaggctacttctatgacaggatatatagtgcccg |
118 |
Q |
| |
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|||||||||||||||||||| ||| ||| | ||| ||| | |||||||||||||||||| |||||||||||| || ||| || || | ||||||||| |
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| T |
24382510 |
ttttcaaaatccaaaacaccagaagttcctgttaaaaaaacagaaaataacatgcaagggttttgggaggctaattgtatagaagcatctgtagtgcccg |
24382411 |
T |
|
| Q |
119 |
aggtcccaaaagtggttgctaat |
141 |
Q |
| |
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|||||||||||| ||||||||| |
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|
| T |
24382410 |
aggtcccaaaagcagttgctaat |
24382388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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