View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2652_high_49 (Length: 227)

Name: NF2652_high_49
Description: NF2652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2652_high_49
NF2652_high_49
[»] chr4 (1 HSPs)
chr4 (1-227)||(36437449-36437674)
[»] chr8 (6 HSPs)
chr8 (92-168)||(16006751-16006827)
chr8 (92-168)||(15981928-15982004)
chr8 (92-168)||(19148949-19149025)
chr8 (92-174)||(15955219-15955301)
chr8 (95-168)||(15963475-15963548)
chr8 (92-168)||(19187511-19187587)
[»] chr1 (3 HSPs)
chr1 (95-168)||(47636765-47636838)
chr1 (94-153)||(47627662-47627721)
chr1 (94-155)||(6525532-6525593)
[»] chr7 (3 HSPs)
chr7 (94-188)||(19939303-19939397)
chr7 (94-188)||(19970442-19970536)
chr7 (94-184)||(20005172-20005262)
[»] chr5 (1 HSPs)
chr5 (95-169)||(469772-469846)
[»] chr2 (1 HSPs)
chr2 (94-184)||(2690524-2690614)


Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 36437674 - 36437449
Alignment:
Q  1 tttagcgtaaacacctagctatttccatgcattacgttgcttaagatttctattataactttagtgatcttatttatctgtaatttgattttacagtggt 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  36437674 tttagcgtaaacacctagctatttccatgcattacgttacttaagatttctattataactt-agtgatcttatttatctgtaatttgattttacagtggt 36437576  T
Q  101 tatatgtctccggagtatgccatggaaggacaattttcggtgaagtctgatgtatacagctttggagttttgctgctagagattattacaggcaaaaaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36437575 tatatgtctccggagtatgccatggaaggacaattttcggtgaagtctgatgtatacagctttggagttttgctgctagagattattacaggcaaaaaga 36437476  T
Q  201 acagtggtcaatatgcagacgatgcat 227  Q
    |||||||||||||||||||||||||||    
T  36437475 acagtggtcaatatgcagacgatgcat 36437449  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 168
Target Start/End: Original strand, 16006751 - 16006827
Alignment:
Q  92 tacagtggttatatgtctccggagtatgccatggaaggacaattttcggtgaagtctgatgtatacagctttggagt 168  Q
    ||||||||||| |||||||| |||||||| |||||||||  ||||||   |||||||||||| ||||||||||||||    
T  16006751 tacagtggttacatgtctccagagtatgcgatggaaggagtattttctacgaagtctgatgtgtacagctttggagt 16006827  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 168
Target Start/End: Complemental strand, 15982004 - 15981928
Alignment:
Q  92 tacagtggttatatgtctccggagtatgccatggaaggacaattttcggtgaagtctgatgtatacagctttggagt 168  Q
    ||||||||||| |||||||| |||||||| |||||||||   ||||||   ||||||||||| ||||||||||||||    
T  15982004 tacagtggttacatgtctccagagtatgcaatggaaggagttttttcgacaaagtctgatgtgtacagctttggagt 15981928  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 168
Target Start/End: Complemental strand, 19149025 - 19148949
Alignment:
Q  92 tacagtggttatatgtctccggagtatgccatggaaggacaattttcggtgaagtctgatgtatacagctttggagt 168  Q
    ||||||||||| |||||||| |||||||| |||||||||   ||||||   ||||||||||| ||||||||||||||    
T  19149025 tacagtggttacatgtctccagagtatgcaatggaaggagttttttcgacaaagtctgatgtgtacagctttggagt 19148949  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 92 - 174
Target Start/End: Original strand, 15955219 - 15955301
Alignment:
Q  92 tacagtggttatatgtctccggagtatgccatggaaggacaattttcggtgaagtctgatgtatacagctttggagttttgct 174  Q
    ||||||||||| |||||||| |||||||| |||||||||  ||||||    ||||||||||| || ||||||||||| |||||    
T  15955219 tacagtggttacatgtctccagagtatgcgatggaaggagtattttctacaaagtctgatgtgtatagctttggagtcttgct 15955301  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 168
Target Start/End: Complemental strand, 15963548 - 15963475
Alignment:
Q  95 agtggttatatgtctccggagtatgccatggaaggacaattttcggtgaagtctgatgtatacagctttggagt 168  Q
    |||||||| |||||||| |||||||| |||||||||  ||||||   |||||||||||| || |||||||||||    
T  15963548 agtggttacatgtctcctgagtatgcgatggaaggagtattttctacgaagtctgatgtgtatagctttggagt 15963475  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 168
Target Start/End: Original strand, 19187511 - 19187587
Alignment:
Q  92 tacagtggttatatgtctccggagtatgccatggaaggacaattttcggtgaagtctgatgtatacagctttggagt 168  Q
    ||||||||||| |||||||| |||||||| |||||||||  ||||||    ||||| ||||| ||||||||||||||    
T  19187511 tacagtggttacatgtctccagagtatgcgatggaaggagtattttctacaaagtcggatgtgtacagctttggagt 19187587  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 168
Target Start/End: Original strand, 47636765 - 47636838
Alignment:
Q  95 agtggttatatgtctccggagtatgccatggaaggacaattttcggtgaagtctgatgtatacagctttggagt 168  Q
    |||||||| ||||||||||||||||| ||| | ||| | || ||| | ||||||||||||||||| ||||||||    
T  47636765 agtggttacatgtctccggagtatgcaatgcatggagagttctcgataaagtctgatgtatacagttttggagt 47636838  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 153
Target Start/End: Original strand, 47627662 - 47627721
Alignment:
Q  94 cagtggttatatgtctccggagtatgccatggaaggacaattttcggtgaagtctgatgt 153  Q
    ||||||||| ||||||||||| ||||| ||| | ||||||||||| | ||||||||||||    
T  47627662 cagtggttacatgtctccggaatatgcaatgcatggacaattttcagagaagtctgatgt 47627721  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 155
Target Start/End: Original strand, 6525532 - 6525593
Alignment:
Q  94 cagtggttatatgtctccggagtatgccatggaaggacaattttcggtgaagtctgatgtat 155  Q
    |||||| |||||| | ||||||||||| ||| | ||||||||||| |||||||| |||||||    
T  6525532 cagtggatatatggcaccggagtatgcaatgcatggacaattttcagtgaagtcagatgtat 6525593  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 188
Target Start/End: Original strand, 19939303 - 19939397
Alignment:
Q  94 cagtggttatatgtctccggagtatgccatggaaggacaattttcggtgaagtctgatgtatacagctttggagttttgctgctagagattatta 188  Q
    |||||||||||||||||| || ||||| ||| ||||||  ||||| |  || |||||||| |  |||||||||||||| || || ||||||||||    
T  19939303 cagtggttatatgtctccagaatatgcaatgcaaggactgttttctgataaatctgatgtctttagctttggagttttacttcttgagattatta 19939397  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 188
Target Start/End: Original strand, 19970442 - 19970536
Alignment:
Q  94 cagtggttatatgtctccggagtatgccatggaaggacaattttcggtgaagtctgatgtatacagctttggagttttgctgctagagattatta 188  Q
    |||||||||||||||||| || ||||| ||| ||||||  ||||| |  || |||||||| |  |||||||||||||| || || ||||||||||    
T  19970442 cagtggttatatgtctccagaatatgcaatgcaaggactgttttctgataaatctgatgtctttagctttggagttttacttcttgagattatta 19970536  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 184
Target Start/End: Complemental strand, 20005262 - 20005172
Alignment:
Q  94 cagtggttatatgtctccggagtatgccatggaaggacaattttcggtgaagtctgatgtatacagctttggagttttgctgctagagatt 184  Q
    ||||||||||||| |||| |||||||| ||| |||||  ||||||||  || || || || | ||||||||||||||||||  ||||||||    
T  20005262 cagtggttatatggctccagagtatgcaatgcaaggagtattttcggataaatcagacgtcttcagctttggagttttgctaatagagatt 20005172  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 169
Target Start/End: Complemental strand, 469846 - 469772
Alignment:
Q  95 agtggttatatgtctccggagtatgccatggaaggacaattttcggtgaagtctgatgtatacagctttggagtt 169  Q
    |||||||||||||||||||| ||||| ||| | ||||||||||| | ||| || ||||| | ||| |||||||||    
T  469846 agtggttatatgtctccggaatatgcaatgcacggacaattttctgagaaatccgatgtgttcagttttggagtt 469772  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 184
Target Start/End: Complemental strand, 2690614 - 2690524
Alignment:
Q  94 cagtggttatatgtctccggagtatgccatggaaggacaattttcggtgaagtctgatgtatacagctttggagttttgctgctagagatt 184  Q
    |||||||||||||||||  |||||||| ||| ||||   |||||| || ||||| |||||||| || ||||| || ||||| |||||||||    
T  2690614 cagtggttatatgtctcatgagtatgctatgcaaggcttattttcagtcaagtcagatgtatatagttttggcgtattgctactagagatt 2690524  T

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