View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2652_high_55 (Length: 213)
Name: NF2652_high_55
Description: NF2652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2652_high_55 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 17 - 203
Target Start/End: Original strand, 2280458 - 2280644
Alignment:
| Q |
17 |
ggaagaatgatgatgagaatgatatctagaatagaggaaatgatgatgaagtgctctgtgtaaccaataataaagaaattcaactgctccagcatgaagc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2280458 |
ggaagaatgatgatgagaatgatatctagaatagaggaaatgatgatgaagtgctctgtgtaaccaataataaagaaattcaactgctccagcatgaagc |
2280557 |
T |
|
| Q |
117 |
aatattgcaataatcactccatcagttctccataatggaagacgggatgctccttccaatgtatagcatgccaaataatatagtaac |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2280558 |
aatattgcaataatcactccatcagttctccataatggaagacgtgatgctccttccaatgtatagcatgccaaataatatagtaac |
2280644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 2258468 - 2258558
Alignment:
| Q |
17 |
ggaagaatgatgatgagaatgatatctagaatagaggaaatgatgatgaagtgctctgtgtaaccaataataaagaaattcaactgctcca |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||| |||| |
|
|
| T |
2258468 |
ggaagaatgatgatgagaatgatatctagaatagaggaaatgatgatgaagtgctctgtgtaaccaatagtaaagaaactccactggtcca |
2258558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 19630511 - 19630578
Alignment:
| Q |
18 |
gaagaatgatgatgagaatgatatctagaatagaggaaatgatgatgaagtgctctgtgtaaccaata |
85 |
Q |
| |
|
|||||||||||||||||||| || | ||| || || ||||||||||||||||||| |||| |||||| |
|
|
| T |
19630511 |
gaagaatgatgatgagaatggtaacgagagtatagataatgatgatgaagtgctctatgtagccaata |
19630578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 19684286 - 19684219
Alignment:
| Q |
18 |
gaagaatgatgatgagaatgatatctagaatagaggaaatgatgatgaagtgctctgtgtaaccaata |
85 |
Q |
| |
|
||||||||||| |||||||| || | |||||| || ||||||||||||||||||| |||| |||||| |
|
|
| T |
19684286 |
gaagaatgatggtgagaatggtaacgagaatatagataatgatgatgaagtgctctatgtagccaata |
19684219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 35369865 - 35369771
Alignment:
| Q |
18 |
gaagaatgatgatgagaatgatatctagaatagaggaaatgatgatgaagtgctctgtgtaaccaataataaagaaattcaactgctccagcatg |
112 |
Q |
| |
|
||||||||||| ||||||||||| | ||| || || ||||||||||||||||||| || | |||||| || | ||| || |||| ||||||||| |
|
|
| T |
35369865 |
gaagaatgatggtgagaatgataacgagagtatagataatgatgatgaagtgctctatgaagccaatagtataaaaactcgactggtccagcatg |
35369771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 35379224 - 35379130
Alignment:
| Q |
18 |
gaagaatgatgatgagaatgatatctagaatagaggaaatgatgatgaagtgctctgtgtaaccaataataaagaaattcaactgctccagcatg |
112 |
Q |
| |
|
||||||||||| ||||||||||| | ||| || || ||||||||||||||||||| || | |||||| || | ||| || |||| ||||||||| |
|
|
| T |
35379224 |
gaagaatgatggtgagaatgataacgagagtatagataatgatgatgaagtgctctatgaagccaatagtataaaaactcgactggtccagcatg |
35379130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University