View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2652_high_7 (Length: 631)
Name: NF2652_high_7
Description: NF2652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2652_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 555; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 18 - 616
Target Start/End: Original strand, 9496998 - 9497594
Alignment:
| Q |
18 |
gaatgctccatgatgagattgactctttctgtaaacaggtataggtatagagtatattttgtaggtgatgttactaacacacacttgcacttacagttgc |
117 |
Q |
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| T |
9496998 |
gaatgctccatgatgagattgactctttctgtaaacaggtataggtatagagtatattttgtgggtgatgttactaacacacacttgcacttacagttgc |
9497097 |
T |
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| Q |
118 |
atgcctctcgcatagtcttttgcaagccagttgaaaaccctctgttccattgtaacttattcctgaacgatcccagctttggacattcgttaatatcttt |
217 |
Q |
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| T |
9497098 |
atgcctctcgcatagtcttttgcaagccagttgaaaaccctctgttcccttgtaacttattcctgaacgatcccagctttggacattcgttaatatcttt |
9497197 |
T |
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| Q |
218 |
atccttgtttgaagttacttctattagaatttttattgtacatgcagaggctttgtctttcttaatattgtcacctgaaaacgaagcattctaatattac |
317 |
Q |
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| T |
9497198 |
atccttgtttgaagttactcctattagaatttttattgaacatgcagaggctttgtctttcttaatattgtcacctgaaaacgaagcattctaatattac |
9497297 |
T |
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| Q |
318 |
ttataattattatggaatccaaggttgcggcagaaaacctggcaaggaagccttacattaattgggctgtcaagagagttacccgatctctgcaggttct |
417 |
Q |
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| T |
9497298 |
ttataattattatggaatccaaggttgcggcagaaaacctggcaaggaagccttacattaattgggctgtcaagagagttacccgatctctgcaggttct |
9497397 |
T |
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| Q |
418 |
atggcccagatctaggacaaccatatttggttccaatgccactgggatggctcttccagcaagtgatgtcgaccttgtggtttctctcccaccagtgagg |
517 |
Q |
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| T |
9497398 |
atggcccagatctaggacaaacatatttggttccaatgccactgggatggctcttccaacaagtgatgtcgaccttgtggtttctctcccaccagtgagg |
9497497 |
T |
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| Q |
518 |
aacctggtaaagtttttgtttggtctcgtgttttttggtagaccatcacctggttggattaacctttattttcttttaacaacaacaacagactaagcc |
616 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
9497498 |
aacctggtaaagtttttgtttggtctcgtgtttttcggtagaccatcacctggttggattaacc-ttattttcttttaacaacaacaaca-actaagcc |
9497594 |
T |
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