View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2652_high_8 (Length: 630)
Name: NF2652_high_8
Description: NF2652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2652_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 583; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 18 - 612
Target Start/End: Original strand, 36288732 - 36289326
Alignment:
| Q |
18 |
gaaggtggagaagtggttattgggatggtagagttttcacaggtgtaccaaatatgacaggaagttatctttttggttttaggcttaatacaaatgataa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36288732 |
gaaggtggagaagtggttattgggatggtagagttttcacaggtgtaccaaatatgacaggaagttatctttttggttttaggcttaatacaaatgatac |
36288831 |
T |
|
| Q |
118 |
tggagaaaggtattttgtatatgaagcattggaaaatagtgataaggtaaggttccagcttggatatgatggatatgagagacaattcaggtggaatgaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
36288832 |
tggagaaaggtattttgtatatgaagcattggaaaatagtgataaggtaaggttccaacttggatatgatggatatgagagacaattcaggtggaatgaa |
36288931 |
T |
|
| Q |
218 |
gaagagaaagaatggaatgtgatactaagtgagcctaataagaagtgtgagttttataattcatgtggtagttttgcaatatgtgatatgtctgattcaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36288932 |
gaagagaaagaatggaatgtgatactaagtgagcctaataagaagtgtgagttttataattcatgtggtagttttgcaatatgtgatatgtctgattcaa |
36289031 |
T |
|
| Q |
318 |
gtttgtgcaaatgcataaaagggtttgaaccaagggatgtgaaaagttggaatagtgggaattggtcaaaagggtgtgagaggatgactccattgaagag |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
36289032 |
gtttgtgcaaatgcataaaagggtttgaaccaagggatgtgaaaagttggaatagtgggaattggtcaaaagggtgtaagaggatgactccattgaagag |
36289131 |
T |
|
| Q |
418 |
tgagagaggtggtaatagttctggtggagatgatggttttttggtgcaaaagggtttgaagttacctgattttgcacgtttggtgagtgctgttgatagt |
517 |
Q |
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| T |
36289132 |
tgagagaggtggtaatagttctggtggagatgatggttttttggtgcaaaagggtttgaagttacctgattttgcacgtttggtgagtgctgttgatagt |
36289231 |
T |
|
| Q |
518 |
aaggattgtgaaggaaattgtctgaagaatagttcttgtactgcctatgtaaatgctattggaattgggtgtatggtttggcatggggagttagt |
612 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36289232 |
aaggattgtgaaggaaattgtctgaagaatagttcttgtactgcctatgtaaatgctattggaattgggtgtatggtttggcatggggagttagt |
36289326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 509 - 603
Target Start/End: Complemental strand, 14521329 - 14521235
Alignment:
| Q |
509 |
gttgatagtaaggattgtgaaggaaattgtctgaagaatagttcttgtactgcctatgtaaatgctattggaattgggtgtatggtttggcatgg |
603 |
Q |
| |
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||||||| ||||||||||||||| |||||| || ||||| |||||||||||| |||| | | | | ||||||||| ||||||||||||||||| |
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| T |
14521329 |
gttgatactaaggattgtgaaggtaattgtttggagaatgcttcttgtactgcttatgcagaagtaactggaattggttgtatggtttggcatgg |
14521235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 14521803 - 14521763
Alignment:
| Q |
23 |
tggagaagtggttattgggatggtagagttttcacaggtgt |
63 |
Q |
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|||||||||||||||||||||||||| ||||| || ||||| |
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| T |
14521803 |
tggagaagtggttattgggatggtagggtttttaccggtgt |
14521763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 297; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 130 - 530
Target Start/End: Complemental strand, 12096773 - 12096373
Alignment:
| Q |
130 |
ttttgtatatgaagcattggaaaatagtgataaggtaaggttccagcttggatatgatggatatgagagacaattcaggtggaatgaagaagagaaagaa |
229 |
Q |
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|||| |||||||||||||||||||||| |||||| || |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12096773 |
ttttttatatgaagcattggaaaatagggataagatacggtttcagcttgggtatgatggatatgagagacaattcaggtggaatgaagaagagaaagaa |
12096674 |
T |
|
| Q |
230 |
tggaatgtgatactaagtgagcctaataagaagtgtgagttttataattcatgtggtagttttgcaatatgtgatatgtctgattcaagtttgtgcaaat |
329 |
Q |
| |
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|| |||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12096673 |
tgcaatgtgttacaaagtgagcttaataagaagtgtgagttttataattcatgtggtagttttgcaatatgtgatatgtctgattcaagtttgtgcaaat |
12096574 |
T |
|
| Q |
330 |
gcataaaagggtttgaaccaagggatgtgaaaagttggaatagtgggaattggtcaaaagggtgtgagaggatgactccattgaagagtgagagaggtgg |
429 |
Q |
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|||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||| | |
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| T |
12096573 |
gcataaaagggtttgagccaaaggatgtgaaaagttgggatagtgggaattggtcaaaagggtgtaagaggatgattccattgaagggtgagagaggcag |
12096474 |
T |
|
| Q |
430 |
taatagttctggtggagatgatggttttttggtgcaaaagggtttgaagttacctgattttgcacgtttggtgagtgctgttgatagtaaggattgtgaa |
529 |
Q |
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|||||||| ||||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
12096473 |
taatagttttggtggagaagatggttttttggtgcaaaggattttgaagttgcctgattttgcacgtttggtgagtgctgcagatagtaaggattgtgaa |
12096374 |
T |
|
| Q |
530 |
g |
530 |
Q |
| |
|
| |
|
|
| T |
12096373 |
g |
12096373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 12096842 - 12096769
Alignment:
| Q |
18 |
gaaggtggagaagtggttattgggatggtagagttttcacaggtgtaccaaatatgacaggaagttatcttttt |
91 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
12096842 |
gaaggtggagaagtggttattgggatggtagagttttcacaggtgtgccaaatatgacaggaagatatcttttt |
12096769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 521 - 603
Target Start/End: Complemental strand, 2692243 - 2692161
Alignment:
| Q |
521 |
gattgtgaaggaaattgtctgaagaatagttcttgtactgcctatgtaaatgctattggaattgggtgtatggtttggcatgg |
603 |
Q |
| |
|
||||||||||| |||||| || |||||| |||||||||||| |||| | | | ||||||||||| |||||| ||||| |||| |
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| T |
2692243 |
gattgtgaaggtaattgtttggagaatacttcttgtactgcttatgcagaagtcattggaattggttgtatgctttggtatgg |
2692161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 521 - 603
Target Start/End: Complemental strand, 2699942 - 2699860
Alignment:
| Q |
521 |
gattgtgaaggaaattgtctgaagaatagttcttgtactgcctatgtaaatgctattggaattgggtgtatggtttggcatgg |
603 |
Q |
| |
|
|||||| |||| |||||| | ||||| ||||||||||||| |||| | | | |||||||||||| |||||||||||| |||| |
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| T |
2699942 |
gattgtaaaggtaattgtttacagaatggttcttgtactgcttatgcagaagttattggaattggttgtatggtttggtatgg |
2699860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 2700428 - 2700388
Alignment:
| Q |
23 |
tggagaagtggttattgggatggtagagttttcacaggtgt |
63 |
Q |
| |
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||||||||||||||||||||||||||| |||| || ||||| |
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| T |
2700428 |
tggagaagtggttattgggatggtagaatttttactggtgt |
2700388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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